PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Tcac01G0020720.1 Alkaloid IO medium borderline
Tcac01G0034790.1 Alkaloid IO low borderline
Tcac01G0034800.1 Alkaloid IO low borderline
Tcac02G0002710.1 Alkaloid IO medium borderline
Tcac02G0002840.1 Alkaloid IO low borderline
Tcac02G0018380.1 Alkaloid IO medium borderline
Tcac02G0018380.2 Alkaloid IO medium borderline
Tcac02G0027340.1 Alkaloid IO low borderline
Tcac02G0027350.1 Alkaloid IO low borderline
Tcac03G0003000.1 Alkaloid IO medium borderline
Tcac03G0006220.1 Alkaloid IO medium borderline
Tcac03G0006220.2 Alkaloid IO medium borderline
Tcac03G0006220.3 Alkaloid IO medium borderline
Tcac03G0006220.4 Alkaloid IO medium borderline
Tcac03G0006220.5 Alkaloid IO medium borderline
Tcac03G0006220.6 Alkaloid IO low borderline
Tcac03G0013980.1 Alkaloid IO medium borderline
Tcac03G0015160.1 Alkaloid IO low borderline
Tcac04G0010020.1 Alkaloid IO medium borderline
Tcac05G0007670.1 Alkaloid IO medium borderline
Tcac05G0007680.1 Alkaloid IO medium borderline
Tcac05G0007690.1 Alkaloid IO low borderline
Tcac05G0014470.1 Alkaloid IO medium borderline
Tcac08G0001650.1 Alkaloid IO medium borderline
Tcac08G0001770.1 Alkaloid IO medium borderline
Tcac08G0001790.1 Alkaloid IO medium borderline
Tcac08G0001850.1 Alkaloid IO low borderline
Tcac08G0003780.1 Alkaloid IO medium borderline
Tcac08G0017590.1 Alkaloid IO medium borderline
Tcac08G0018240.1 Alkaloid IO medium borderline
Tcac09G0005540.1 Alkaloid IO medium borderline
Tcac09G0020590.2 Alkaloid IO medium borderline
Tcac09G0030510.1 Alkaloid IO medium borderline
Tcac10G0012610.1 Alkaloid IO low borderline
Tcac10G0012610.2 Alkaloid IO low borderline