PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX2/CYP85A2
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Gene Pathway Family Confidence Status
Tcac01G0006340.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0010840.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0010980.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0024320.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0031200.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0033260.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac01G0033260.2 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0009360.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0009390.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0009460.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0015460.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0015860.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0017870.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0024140.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0024260.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac02G0029700.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0003050.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0003070.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0003100.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0009860.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0009860.2 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0013980.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0014020.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0014430.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0019970.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0025750.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac03G0028830.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac04G0001740.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac04G0001770.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac04G0018390.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac04G0018400.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac04G0024250.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0011020.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0014190.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0014500.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0014500.2 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0014520.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0018360.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0019850.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac05G0019950.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac06G0004820.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac06G0019830.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0001700.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0001710.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0001750.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0001760.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0014900.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0015800.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0015860.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac07G0015870.1 Steroid BR6OX2/CYP85A2 low borderline