PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Tcac01G0001790.1 Flavonoid F3H medium borderline
Tcac01G0001810.1 Flavonoid F3H medium borderline
Tcac01G0005980.1 Flavonoid F3H low borderline
Tcac01G0005990.1 Flavonoid F3H low borderline
Tcac01G0006000.1 Flavonoid F3H low borderline
Tcac01G0013080.1 Flavonoid F3H medium pass
Tcac01G0016460.1 Flavonoid F3H medium pass
Tcac01G0016460.2 Flavonoid F3H medium pass
Tcac01G0016890.1 Flavonoid F3H low borderline
Tcac01G0017540.1 Flavonoid F3H medium borderline
Tcac01G0023930.1 Flavonoid F3H medium borderline
Tcac01G0023940.1 Flavonoid F3H medium borderline
Tcac01G0023940.2 Flavonoid F3H medium borderline
Tcac01G0024060.1 Flavonoid F3H medium borderline
Tcac01G0029500.1 Flavonoid F3H medium borderline
Tcac01G0030770.1 Flavonoid F3H medium borderline
Tcac01G0034610.1 Flavonoid F3H medium borderline
Tcac02G0009100.1 Flavonoid F3H medium borderline
Tcac02G0009110.1 Flavonoid F3H medium borderline
Tcac02G0009130.1 Flavonoid F3H medium borderline
Tcac02G0012870.1 Flavonoid F3H medium borderline
Tcac02G0012890.1 Flavonoid F3H medium borderline
Tcac02G0023780.1 Flavonoid F3H medium borderline
Tcac02G0026630.1 Flavonoid F3H medium borderline
Tcac02G0028350.1 Flavonoid F3H medium borderline
Tcac03G0012800.1 Flavonoid F3H low borderline
Tcac03G0013280.1 Flavonoid F3H low borderline
Tcac03G0014630.1 Flavonoid F3H medium borderline
Tcac03G0014630.2 Flavonoid F3H medium borderline
Tcac03G0018850.1 Flavonoid F3H medium borderline
Tcac03G0019530.1 Flavonoid F3H medium borderline
Tcac03G0021110.1 Flavonoid F3H medium borderline
Tcac03G0022480.1 Flavonoid F3H medium pass
Tcac03G0022480.2 Flavonoid F3H medium pass
Tcac03G0022500.1 Flavonoid F3H medium pass
Tcac03G0024420.1 Flavonoid F3H medium borderline
Tcac03G0025570.1 Flavonoid F3H medium pass
Tcac04G0018140.1 Flavonoid F3H low borderline
Tcac04G0022900.1 Flavonoid F3H medium borderline
Tcac04G0022920.1 Flavonoid F3H medium borderline
Tcac04G0022930.1 Flavonoid F3H medium borderline
Tcac04G0022950.1 Flavonoid F3H medium borderline
Tcac04G0022960.1 Flavonoid F3H medium borderline
Tcac04G0022970.1 Flavonoid F3H medium borderline
Tcac04G0022970.2 Flavonoid F3H medium borderline
Tcac04G0022980.1 Flavonoid F3H medium borderline
Tcac04G0022980.2 Flavonoid F3H medium borderline
Tcac04G0023000.1 Flavonoid F3H medium borderline
Tcac04G0023040.1 Flavonoid F3H medium borderline
Tcac04G0023060.1 Flavonoid F3H medium borderline