PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Tcac01G0003930.1 Flavonoid UFGT medium pass
Tcac01G0003940.1 Flavonoid UFGT medium pass
Tcac01G0003950.1 Flavonoid UFGT medium pass
Tcac01G0003960.1 Flavonoid UFGT medium pass
Tcac01G0003970.1 Flavonoid UFGT medium pass
Tcac01G0003980.1 Flavonoid UFGT low borderline
Tcac01G0004000.1 Flavonoid UFGT medium pass
Tcac01G0004010.1 Flavonoid UFGT medium pass
Tcac01G0006240.1 Flavonoid UFGT medium pass
Tcac01G0008570.1 Flavonoid UFGT high pass
Tcac01G0009430.1 Flavonoid UFGT medium pass
Tcac01G0009430.2 Flavonoid UFGT medium pass
Tcac01G0009440.1 Flavonoid UFGT medium pass
Tcac01G0009440.2 Flavonoid UFGT medium pass
Tcac01G0009450.1 Flavonoid UFGT medium pass
Tcac01G0009460.1 Flavonoid UFGT medium pass
Tcac01G0016520.1 Flavonoid UFGT high pass
Tcac01G0016720.1 Flavonoid UFGT low borderline
Tcac01G0016740.1 Flavonoid UFGT high pass
Tcac01G0016740.2 Flavonoid UFGT high pass
Tcac01G0016770.1 Flavonoid UFGT high pass
Tcac01G0017010.1 Flavonoid UFGT medium pass
Tcac01G0017200.1 Flavonoid UFGT high pass
Tcac01G0019650.1 Flavonoid UFGT medium pass
Tcac01G0019660.1 Flavonoid UFGT medium pass
Tcac01G0019680.1 Flavonoid UFGT medium pass
Tcac01G0019720.1 Flavonoid UFGT medium pass
Tcac01G0032070.1 Flavonoid UFGT medium pass
Tcac01G0032080.1 Flavonoid UFGT high pass
Tcac01G0032960.1 Flavonoid UFGT low borderline
Tcac01G0032980.1 Flavonoid UFGT low borderline
Tcac02G0000370.1 Flavonoid UFGT medium pass
Tcac02G0000380.1 Flavonoid UFGT high pass
Tcac02G0002940.1 Flavonoid UFGT medium pass
Tcac02G0002950.1 Flavonoid UFGT medium pass
Tcac02G0002960.1 Flavonoid UFGT medium pass
Tcac02G0002970.1 Flavonoid UFGT medium pass
Tcac02G0003910.1 Flavonoid UFGT low borderline
Tcac02G0003910.2 Flavonoid UFGT low borderline
Tcac02G0003910.3 Flavonoid UFGT low borderline
Tcac02G0003910.5 Flavonoid UFGT low borderline
Tcac02G0005240.1 Flavonoid UFGT medium pass
Tcac02G0010080.1 Flavonoid UFGT high pass
Tcac02G0010090.1 Flavonoid UFGT medium pass
Tcac02G0010100.1 Flavonoid UFGT medium pass
Tcac02G0010110.1 Flavonoid UFGT medium pass
Tcac02G0010170.1 Flavonoid UFGT medium pass
Tcac02G0010180.1 Flavonoid UFGT medium pass
Tcac02G0010190.1 Flavonoid UFGT low borderline
Tcac02G0010520.1 Flavonoid UFGT medium pass