PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
Reset
Gene Pathway Family Confidence Status
Tcac01G0006200.1 Alkaloid GS high pass
Tcac01G0006210.1 Alkaloid GS medium pass
Tcac01G0008330.1 Alkaloid GS high pass
Tcac01G0008340.1 Alkaloid GS high pass
Tcac01G0008350.1 Alkaloid GS high pass
Tcac01G0008350.2 Alkaloid GS high pass
Tcac01G0008360.1 Alkaloid GS medium pass
Tcac01G0008370.1 Alkaloid GS medium pass
Tcac01G0008380.1 Alkaloid GS high pass
Tcac01G0008390.1 Alkaloid GS medium pass
Tcac01G0008400.1 Alkaloid GS medium pass
Tcac01G0008410.1 Alkaloid GS high pass
Tcac01G0008420.1 Alkaloid GS high pass
Tcac01G0011490.1 Alkaloid GS high pass
Tcac01G0011490.2 Alkaloid GS high pass
Tcac01G0020540.1 Alkaloid GS low borderline
Tcac01G0020550.1 Alkaloid GS low borderline
Tcac01G0022190.1 Alkaloid GS medium pass
Tcac01G0022190.2 Alkaloid GS medium pass
Tcac02G0010460.1 Alkaloid GS low borderline
Tcac02G0010470.1 Alkaloid GS high pass
Tcac02G0022880.1 Alkaloid GS low borderline
Tcac03G0013210.1 Alkaloid GS low borderline
Tcac03G0014880.1 Alkaloid GS medium pass
Tcac03G0014890.1 Alkaloid GS medium pass
Tcac03G0019310.1 Alkaloid GS high pass
Tcac03G0019310.2 Alkaloid GS high pass
Tcac03G0019310.3 Alkaloid GS high pass
Tcac03G0019330.1 Alkaloid GS medium pass
Tcac04G0000860.1 Alkaloid GS low borderline
Tcac04G0000870.1 Alkaloid GS low borderline
Tcac04G0000880.1 Alkaloid GS low borderline
Tcac06G0017840.1 Alkaloid GS low borderline
Tcac06G0017850.1 Alkaloid GS low borderline
Tcac07G0009780.1 Alkaloid GS low borderline
Tcac07G0009780.2 Alkaloid GS low borderline
Tcac08G0000680.1 Alkaloid GS low borderline
Tcac08G0000680.2 Alkaloid GS low borderline
Tcac08G0004700.1 Alkaloid GS high pass
Tcac09G0031140.1 Alkaloid GS low borderline
Tcac09G0031140.2 Alkaloid GS low borderline
Tcac10G0017100.1 Alkaloid GS low borderline