PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Tcac01G0003590.1 Steroid CYP90D1 medium borderline
Tcac01G0004550.1 Steroid CYP90D1 low borderline
Tcac01G0009540.1 Steroid CYP90D1 low borderline
Tcac01G0009540.2 Steroid CYP90D1 low borderline
Tcac01G0019180.1 Steroid CYP90D1 medium borderline
Tcac01G0020700.1 Steroid CYP90D1 low borderline
Tcac01G0034200.1 Steroid CYP90D1 medium borderline
Tcac01G0034800.1 Steroid CYP90D1 low borderline
Tcac01G0037430.1 Steroid CYP90D1 low borderline
Tcac01G0037440.1 Steroid CYP90D1 low borderline
Tcac02G0002710.1 Steroid CYP90D1 low borderline
Tcac02G0002720.1 Steroid CYP90D1 low borderline
Tcac02G0024130.1 Steroid CYP90D1 low borderline
Tcac02G0029650.1 Steroid CYP90D1 low borderline
Tcac02G0029660.1 Steroid CYP90D1 low borderline
Tcac02G0029680.1 Steroid CYP90D1 low borderline
Tcac02G0029680.2 Steroid CYP90D1 low borderline
Tcac02G0029690.1 Steroid CYP90D1 low borderline
Tcac02G0029710.1 Steroid CYP90D1 low borderline
Tcac02G0029720.1 Steroid CYP90D1 low borderline
Tcac02G0029720.2 Steroid CYP90D1 low borderline
Tcac02G0030080.1 Steroid CYP90D1 low borderline
Tcac03G0003020.1 Steroid CYP90D1 low borderline
Tcac03G0015160.1 Steroid CYP90D1 medium borderline
Tcac03G0024850.2 Steroid CYP90D1 medium borderline
Tcac04G0012240.1 Steroid CYP90D1 low borderline
Tcac05G0014470.1 Steroid CYP90D1 low borderline
Tcac05G0014490.1 Steroid CYP90D1 low borderline
Tcac05G0014510.1 Steroid CYP90D1 low borderline
Tcac06G0009350.1 Steroid CYP90D1 medium borderline
Tcac06G0010540.1 Steroid CYP90D1 low borderline
Tcac06G0019920.1 Steroid CYP90D1 medium pass
Tcac07G0001730.1 Steroid CYP90D1 low borderline
Tcac07G0001740.1 Steroid CYP90D1 low borderline
Tcac07G0001780.1 Steroid CYP90D1 low borderline
Tcac07G0004190.1 Steroid CYP90D1 medium borderline
Tcac08G0001620.1 Steroid CYP90D1 low borderline
Tcac08G0001650.1 Steroid CYP90D1 low borderline
Tcac08G0001660.1 Steroid CYP90D1 low borderline
Tcac08G0001670.1 Steroid CYP90D1 low borderline
Tcac08G0001720.1 Steroid CYP90D1 low borderline
Tcac08G0001790.1 Steroid CYP90D1 low borderline
Tcac08G0002230.1 Steroid CYP90D1 low borderline
Tcac08G0002840.1 Steroid CYP90D1 low borderline
Tcac08G0003010.1 Steroid CYP90D1 medium borderline
Tcac08G0003030.1 Steroid CYP90D1 medium borderline
Tcac08G0003030.2 Steroid CYP90D1 medium borderline
Tcac08G0014210.1 Steroid CYP90D1 medium borderline
Tcac08G0017390.1 Steroid CYP90D1 low borderline
Tcac08G0017590.1 Steroid CYP90D1 low borderline