PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
Tcac01G0020720.1 Steroid CPD/CYP90A1 low borderline
Tcac01G0020730.1 Steroid CPD/CYP90A1 low borderline
Tcac02G0001770.1 Steroid CPD/CYP90A1 low borderline
Tcac02G0031460.1 Steroid CPD/CYP90A1 low borderline
Tcac03G0023910.1 Steroid CPD/CYP90A1 low borderline
Tcac03G0028840.1 Steroid CPD/CYP90A1 medium borderline
Tcac05G0007250.1 Steroid CPD/CYP90A1 low borderline
Tcac05G0007840.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0001710.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0001740.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0001770.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0009110.1 Steroid CPD/CYP90A1 medium borderline
Tcac08G0014770.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0014780.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0015200.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0017950.1 Steroid CPD/CYP90A1 medium borderline
Tcac08G0017960.1 Steroid CPD/CYP90A1 medium borderline
Tcac08G0017990.1 Steroid CPD/CYP90A1 medium borderline
Tcac09G0000060.1 Steroid CPD/CYP90A1 medium borderline
Tcac10G0011250.1 Steroid CPD/CYP90A1 low borderline