PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status Best Target
Tcac01G0012370.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac01G0012370.2 Alkaloid 8HGO medium pass 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac01G0012390.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac01G0021680.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac01G0021680.2 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac01G0022830.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac03G0019740.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0017320.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0019600.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0019600.2 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0019600.3 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0019600.4 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0019610.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac05G0019620.1 Alkaloid 8HGO medium pass 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0005310.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0005310.2 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0005310.3 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0005310.4 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0009900.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0009900.2 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0009900.3 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0009900.4 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013710.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013710.2 Alkaloid 8HGO medium pass 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013740.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013760.1 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013760.2 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013760.3 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013760.4 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013760.5 Alkaloid 8HGO medium pass 8HGO__00001__sp_W8JWV8_8HGO_CATRO
Tcac08G0013760.6 Alkaloid 8HGO medium borderline 8HGO__00001__sp_W8JWV8_8HGO_CATRO