Theobroma cacao (theobroma_cacao)
Imported from atlas release summary for Theobroma cacao.
2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2109
Candidate Genes
C4H
6.52%
C3'H/CYP98A
6.0%
BAHD
5.85%
CYP76
3.91%
POD
3.82%
IFS
3.78%
UFGT
3.67%
UGT
3.61%
Other Families
62.84%
More Families (96)
7DLGT
184
3.5%
T3O
177
3.36%
4CL
159
3.02%
NMT
155
2.94%
F3H
149
2.83%
DWF4/CYP90B1
143
2.72%
STR
123
2.34%
F3'H/CYP75B
94
1.79%
CAD
94
1.79%
CODM/T6ODM
93
1.77%
CAS
82
1.56%
BR6OX2/CYP85A2
78
1.48%
CYP71
72
1.37%
SMT1/SMT2/SMT3
71
1.35%
HCT
65
1.23%
CYP90D1
59
1.12%
TPS
58
1.1%
H6H
56
1.06%
GES
56
1.06%
G8O/G8H
55
1.04%
TRI/TRII
55
1.04%
TAT
47
0.89%
SGD
46
0.87%
BBE
46
0.87%
RAS
46
0.87%
LAC
45
0.85%
T16H
43
0.82%
IFR
43
0.82%
GS
42
0.8%
PMT
42
0.8%
LAMT
40
0.76%
FNS
36
0.68%
IO
35
0.66%
CSE
35
0.66%
COMT
33
0.63%
PYKS
32
0.61%
ANR
32
0.61%
8HGO
31
0.59%
NCS
31
0.59%
7DLH
30
0.57%
F3'5'H/CYP75A
30
0.57%
16OMT
23
0.44%
COR
22
0.42%
BR6OX1/CYP85A1
22
0.42%
SLS
21
0.4%
CCR
21
0.4%
PAL
20
0.38%
F5H/CYP84A
20
0.38%
CPD/CYP90A1
20
0.38%
CNMT
18
0.34%
CYP51G1
16
0.3%
DFR
14
0.27%
CCoAOMT
14
0.27%
FPPS
14
0.27%
MPO
13
0.25%
ANS/LDOX
13
0.25%
CHS
13
0.25%
SQE
13
0.25%
GGPPS
13
0.25%
DXS
12
0.23%
HPPR
11
0.21%
SQS/FDFT1
10
0.19%
ROT3/CYP90C1
8
0.15%
DET2
8
0.15%
TYDC_DDC
7
0.13%
CYP80B1
7
0.13%
CHI
7
0.13%
SMO1/SMO2
7
0.13%
XMT_MXMT_DXMT
6
0.11%
ODC
6
0.11%
CPR
6
0.11%
AACT
6
0.11%
MVK
6
0.11%
ISY
5
0.09%
FK
4
0.08%
HMGR
4
0.08%
CYP719
3
0.06%
DXR
3
0.06%
HMGS
3
0.06%
MVD
3
0.06%
ADC
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
TDC
2
0.04%
FLS
2
0.04%
DWF1
2
0.04%
MCT/IspD
2
0.04%
HDS/IspG
2
0.04%
HYD1
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
IDI
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 617 | 19 | BAHD (254) | View species results |
| Alkaloid pathway | 471 | 22 | 7DLGT (91) | View species results |
| Phenylpropanoid pathway | 442 | 11 | POD (197) | View species results |
| Flavonoid pathway | 246 | 9 | UFGT (165) | View species results |
| Rosmarinic acid pathway | 193 | 7 | C4H (70) | View species results |
| Steroid pathway | 140 | 13 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1997 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 419 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Tcac01G0031020.1 | Alkaloid | PYKS | low | borderline |
| Tcac01G0036180.1 | Alkaloid | PYKS | high | pass |
| Tcac02G0006560.1 | Alkaloid | PYKS | high | pass |
| Tcac02G0008160.1 | Alkaloid | PYKS | low | borderline |
| Tcac02G0021410.1 | Alkaloid | PYKS | low | borderline |
| Tcac03G0023340.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0004690.1 | Alkaloid | PYKS | high | pass |
| Tcac04G0004690.2 | Alkaloid | PYKS | high | pass |
| Tcac04G0004690.3 | Alkaloid | PYKS | high | pass |
| Tcac04G0019010.1 | Alkaloid | PYKS | high | pass |
| Tcac04G0022030.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022040.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022040.2 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022060.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022070.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022080.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022090.1 | Alkaloid | PYKS | low | borderline |
| Tcac04G0022100.1 | Alkaloid | PYKS | low | borderline |
| Tcac05G0012970.1 | Alkaloid | PYKS | medium | pass |
| Tcac05G0012980.1 | Alkaloid | PYKS | high | pass |
| Tcac05G0012980.2 | Alkaloid | PYKS | high | pass |
| Tcac05G0012990.1 | Alkaloid | PYKS | high | pass |
| Tcac08G0002650.1 | Alkaloid | PYKS | low | borderline |
| Tcac08G0013550.1 | Alkaloid | PYKS | high | pass |
| Tcac08G0013560.1 | Alkaloid | PYKS | medium | pass |
| Tcac09G0006500.1 | Alkaloid | PYKS | low | borderline |
| Tcac09G0011680.1 | Alkaloid | PYKS | low | borderline |
| Tcac09G0014410.1 | Alkaloid | PYKS | low | borderline |
| Tcac09G0030580.1 | Alkaloid | PYKS | low | borderline |
| Tcac10G0005500.1 | Alkaloid | PYKS | low | borderline |
| Tcac10G0005790.1 | Alkaloid | PYKS | low | borderline |
| Tcac10G0005800.1 | Alkaloid | PYKS | low | borderline |