PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Tcac01G0032050.1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Tcac01G0032050.2 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Tcac01G0035120.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Tcac01G0035130.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Tcac01G0035140.1 Phenylpropanoid CCR medium pass CCR__00004__sp_G7JEE5_CCR2_MEDTR
Tcac01G0035150.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Tcac02G0021490.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Tcac04G0001060.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Tcac04G0012620.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Tcac04G0025530.1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Tcac05G0019300.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Tcac06G0003740.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Tcac06G0005770.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Tcac07G0015890.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Tcac07G0015890.2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Tcac08G0009510.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Tcac08G0009520.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Tcac09G0006460.1 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Tcac09G0006460.2 Phenylpropanoid CCR low borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
Tcac09G0015340.1 Phenylpropanoid CCR medium pass CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Tcac09G0033080.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY