PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status
Tcac01G0022840.1 Alkaloid BBE medium borderline
Tcac02G0029350.1 Alkaloid BBE medium borderline
Tcac03G0005920.1 Alkaloid BBE medium borderline
Tcac03G0015310.1 Alkaloid BBE medium borderline
Tcac03G0015320.1 Alkaloid BBE medium borderline
Tcac03G0015350.1 Alkaloid BBE medium borderline
Tcac03G0015370.1 Alkaloid BBE medium borderline
Tcac03G0015380.1 Alkaloid BBE medium borderline
Tcac03G0015380.2 Alkaloid BBE medium borderline
Tcac03G0015400.1 Alkaloid BBE medium borderline
Tcac03G0015410.1 Alkaloid BBE medium borderline
Tcac04G0013710.1 Alkaloid BBE medium borderline
Tcac04G0017180.1 Alkaloid BBE medium borderline
Tcac04G0017190.1 Alkaloid BBE medium borderline
Tcac04G0017220.1 Alkaloid BBE medium borderline
Tcac05G0015520.1 Alkaloid BBE low borderline
Tcac05G0016070.1 Alkaloid BBE low borderline
Tcac06G0001060.1 Alkaloid BBE medium borderline
Tcac06G0001070.1 Alkaloid BBE medium borderline
Tcac06G0001080.1 Alkaloid BBE medium borderline
Tcac06G0001090.1 Alkaloid BBE medium borderline
Tcac06G0001110.1 Alkaloid BBE medium borderline
Tcac06G0001120.1 Alkaloid BBE medium borderline
Tcac06G0001130.1 Alkaloid BBE medium borderline
Tcac06G0001140.1 Alkaloid BBE medium borderline
Tcac06G0001170.1 Alkaloid BBE medium borderline
Tcac06G0001180.1 Alkaloid BBE medium borderline
Tcac06G0001190.1 Alkaloid BBE medium borderline
Tcac06G0001200.1 Alkaloid BBE medium borderline
Tcac06G0001210.1 Alkaloid BBE medium borderline
Tcac06G0001230.1 Alkaloid BBE medium borderline
Tcac06G0001240.1 Alkaloid BBE medium borderline
Tcac06G0001270.1 Alkaloid BBE medium borderline
Tcac06G0001270.2 Alkaloid BBE medium borderline
Tcac06G0001300.1 Alkaloid BBE medium borderline
Tcac06G0001300.2 Alkaloid BBE medium borderline
Tcac06G0001300.3 Alkaloid BBE medium borderline
Tcac06G0001320.1 Alkaloid BBE medium borderline
Tcac06G0001330.1 Alkaloid BBE medium borderline
Tcac06G0001340.1 Alkaloid BBE medium borderline
Tcac06G0001360.1 Alkaloid BBE medium borderline
Tcac06G0001360.2 Alkaloid BBE medium borderline
Tcac06G0001360.3 Alkaloid BBE medium borderline
Tcac06G0001360.4 Alkaloid BBE medium borderline
Tcac06G0001390.1 Alkaloid BBE medium borderline
Tcac10G0011900.1 Alkaloid BBE medium borderline