PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
Tcac09G0015690.1 Alkaloid 7DLGT low borderline
Tcac09G0016120.1 Alkaloid 7DLGT low borderline
Tcac09G0018100.1 Alkaloid 7DLGT high pass
Tcac09G0020670.1 Alkaloid 7DLGT low borderline
Tcac09G0020670.2 Alkaloid 7DLGT low borderline
Tcac09G0020670.3 Alkaloid 7DLGT low borderline
Tcac09G0028040.1 Alkaloid 7DLGT medium pass
Tcac09G0028050.1 Alkaloid 7DLGT medium pass
Tcac09G0028060.1 Alkaloid 7DLGT medium pass
Tcac09G0028720.1 Alkaloid 7DLGT high pass
Tcac09G0028810.1 Alkaloid 7DLGT high pass
Tcac09G0028830.1 Alkaloid 7DLGT high pass
Tcac09G0028990.1 Alkaloid 7DLGT medium pass
Tcac09G0032370.1 Alkaloid 7DLGT low borderline
Tcac09G0033160.1 Alkaloid 7DLGT low borderline
Tcac09G0033170.1 Alkaloid 7DLGT medium pass
Tcac09G0033180.1 Alkaloid 7DLGT medium pass
Tcac09G0033190.1 Alkaloid 7DLGT low borderline
Tcac09G0033190.2 Alkaloid 7DLGT medium pass
Tcac09G0033200.1 Alkaloid 7DLGT low borderline
Tcac09G0033210.1 Alkaloid 7DLGT low borderline
Tcac10G0002860.1 Alkaloid 7DLGT high pass
Tcac10G0002870.1 Alkaloid 7DLGT high pass
Tcac10G0002880.1 Alkaloid 7DLGT medium pass
Tcac10G0002900.1 Alkaloid 7DLGT high pass
Tcac10G0002910.1 Alkaloid 7DLGT medium pass
Tcac10G0002920.1 Alkaloid 7DLGT high pass
Tcac10G0002930.1 Alkaloid 7DLGT medium pass
Tcac10G0002940.1 Alkaloid 7DLGT high pass
Tcac10G0002960.1 Alkaloid 7DLGT high pass
Tcac10G0002970.1 Alkaloid 7DLGT high pass
Tcac10G0015170.1 Alkaloid 7DLGT low borderline
Tcac10G0015210.1 Alkaloid 7DLGT low borderline
TcacsCAffold_180000330.1 Alkaloid 7DLGT low borderline