PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX2/CYP85A2
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Gene Pathway Family Confidence Status
Tcac08G0001730.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0003790.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0003890.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0003900.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0005680.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0008980.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0008980.2 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0009100.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0017600.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac08G0018350.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0007490.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0007490.2 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0018380.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0019070.1 Steroid BR6OX2/CYP85A2 medium borderline
Tcac09G0023110.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0026460.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0028200.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0030250.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac09G0033950.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016350.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016360.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016400.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016420.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016440.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016460.1 Steroid BR6OX2/CYP85A2 low borderline
Tcac10G0016790.1 Steroid BR6OX2/CYP85A2 low borderline
TcacsCAffold_540000440.1 Steroid BR6OX2/CYP85A2 low borderline
TcacsCAffold_540000450.1 Steroid BR6OX2/CYP85A2 low borderline