PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Tcac03G0014010.1 Rosmarinic Acid C4H low borderline
Tcac03G0014020.1 Rosmarinic Acid C4H low borderline
Tcac03G0014060.1 Rosmarinic Acid C4H medium pass
Tcac03G0014440.1 Rosmarinic Acid C4H low borderline
Tcac03G0015820.1 Rosmarinic Acid C4H low borderline
Tcac03G0019970.1 Rosmarinic Acid C4H low borderline
Tcac03G0020980.1 Rosmarinic Acid C4H low borderline
Tcac03G0020990.1 Rosmarinic Acid C4H low borderline
Tcac03G0023550.1 Rosmarinic Acid C4H low borderline
Tcac03G0023660.1 Rosmarinic Acid C4H medium pass
Tcac03G0023670.1 Rosmarinic Acid C4H medium pass
Tcac03G0023680.1 Rosmarinic Acid C4H low borderline
Tcac03G0023680.2 Rosmarinic Acid C4H low borderline
Tcac03G0023680.3 Rosmarinic Acid C4H low borderline
Tcac03G0023690.1 Rosmarinic Acid C4H low borderline
Tcac03G0023690.2 Rosmarinic Acid C4H low borderline
Tcac03G0023710.1 Rosmarinic Acid C4H low borderline
Tcac03G0023730.1 Rosmarinic Acid C4H medium pass
Tcac03G0023740.1 Rosmarinic Acid C4H low borderline
Tcac03G0024240.1 Rosmarinic Acid C4H low borderline
Tcac03G0024250.1 Rosmarinic Acid C4H low borderline
Tcac03G0028830.1 Rosmarinic Acid C4H low borderline
Tcac03G0028840.1 Rosmarinic Acid C4H medium pass
Tcac03G0029480.1 Rosmarinic Acid C4H low borderline
Tcac04G0001570.1 Rosmarinic Acid C4H low borderline
Tcac04G0001740.1 Rosmarinic Acid C4H low borderline
Tcac04G0002070.1 Rosmarinic Acid C4H low borderline
Tcac04G0006160.1 Rosmarinic Acid C4H medium pass
Tcac04G0009020.1 Rosmarinic Acid C4H low borderline
Tcac04G0009980.1 Rosmarinic Acid C4H medium pass
Tcac04G0010010.1 Rosmarinic Acid C4H low borderline
Tcac04G0010030.1 Rosmarinic Acid C4H low borderline
Tcac04G0010040.1 Rosmarinic Acid C4H low borderline
Tcac04G0010050.1 Rosmarinic Acid C4H medium pass
Tcac04G0010810.1 Rosmarinic Acid C4H medium pass
Tcac04G0010820.1 Rosmarinic Acid C4H low borderline
Tcac04G0011790.1 Rosmarinic Acid C4H low borderline
Tcac04G0012230.1 Rosmarinic Acid C4H low borderline
Tcac04G0012240.1 Rosmarinic Acid C4H medium pass
Tcac04G0013650.1 Rosmarinic Acid C4H medium pass
Tcac04G0018390.1 Rosmarinic Acid C4H low borderline
Tcac04G0018400.1 Rosmarinic Acid C4H low borderline
Tcac04G0019930.1 Rosmarinic Acid C4H medium pass
Tcac04G0022780.1 Rosmarinic Acid C4H low borderline
Tcac04G0022780.2 Rosmarinic Acid C4H low borderline
Tcac04G0024250.1 Rosmarinic Acid C4H low borderline
Tcac05G0007670.1 Rosmarinic Acid C4H medium pass
Tcac05G0007680.1 Rosmarinic Acid C4H low borderline
Tcac05G0008230.1 Rosmarinic Acid C4H low borderline
Tcac05G0011020.1 Rosmarinic Acid C4H medium pass