PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Tcac05G0014190.1 Rosmarinic Acid C4H medium pass
Tcac05G0014460.1 Rosmarinic Acid C4H medium pass
Tcac05G0014460.2 Rosmarinic Acid C4H medium pass
Tcac05G0014470.1 Rosmarinic Acid C4H low borderline
Tcac05G0014480.1 Rosmarinic Acid C4H low borderline
Tcac05G0014490.1 Rosmarinic Acid C4H low borderline
Tcac05G0014500.1 Rosmarinic Acid C4H medium pass
Tcac05G0014500.2 Rosmarinic Acid C4H medium pass
Tcac05G0014510.1 Rosmarinic Acid C4H medium pass
Tcac05G0014520.1 Rosmarinic Acid C4H medium pass
Tcac05G0017940.4 Rosmarinic Acid C4H low borderline
Tcac05G0017940.5 Rosmarinic Acid C4H low borderline
Tcac05G0017940.7 Rosmarinic Acid C4H low borderline
Tcac05G0018360.1 Rosmarinic Acid C4H low borderline
Tcac05G0019830.1 Rosmarinic Acid C4H low borderline
Tcac05G0019850.1 Rosmarinic Acid C4H medium pass
Tcac05G0019880.1 Rosmarinic Acid C4H low borderline
Tcac05G0019910.1 Rosmarinic Acid C4H low borderline
Tcac05G0019940.1 Rosmarinic Acid C4H low borderline
Tcac05G0019950.1 Rosmarinic Acid C4H low borderline
Tcac05G0019970.1 Rosmarinic Acid C4H low borderline
Tcac05G0019980.1 Rosmarinic Acid C4H low borderline
Tcac05G0019990.1 Rosmarinic Acid C4H low borderline
Tcac05G0019990.2 Rosmarinic Acid C4H low borderline
Tcac05G0020010.1 Rosmarinic Acid C4H low borderline
Tcac05G0020030.1 Rosmarinic Acid C4H low borderline
Tcac05G0020030.2 Rosmarinic Acid C4H low borderline
Tcac06G0004790.1 Rosmarinic Acid C4H low borderline
Tcac06G0004800.1 Rosmarinic Acid C4H low borderline
Tcac06G0004820.1 Rosmarinic Acid C4H medium pass
Tcac06G0004920.1 Rosmarinic Acid C4H low borderline
Tcac06G0009350.1 Rosmarinic Acid C4H low borderline
Tcac06G0010540.1 Rosmarinic Acid C4H medium pass
Tcac06G0013480.1 Rosmarinic Acid C4H low borderline
Tcac06G0013480.2 Rosmarinic Acid C4H low borderline
Tcac06G0019830.1 Rosmarinic Acid C4H low borderline
Tcac07G0001700.1 Rosmarinic Acid C4H low borderline
Tcac07G0001710.1 Rosmarinic Acid C4H low borderline
Tcac07G0001720.1 Rosmarinic Acid C4H medium pass
Tcac07G0001720.2 Rosmarinic Acid C4H low borderline
Tcac07G0001720.3 Rosmarinic Acid C4H low borderline
Tcac07G0001720.4 Rosmarinic Acid C4H low borderline
Tcac07G0001730.1 Rosmarinic Acid C4H low borderline
Tcac07G0001740.1 Rosmarinic Acid C4H low borderline
Tcac07G0001750.1 Rosmarinic Acid C4H medium pass
Tcac07G0001760.1 Rosmarinic Acid C4H medium pass
Tcac07G0001770.1 Rosmarinic Acid C4H low borderline
Tcac07G0001770.2 Rosmarinic Acid C4H medium pass
Tcac07G0001780.1 Rosmarinic Acid C4H low borderline
Tcac07G0004190.1 Rosmarinic Acid C4H low borderline