PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
Tcac07G0013580.1 Rosmarinic Acid C4H low borderline
Tcac07G0013590.1 Rosmarinic Acid C4H low borderline
Tcac07G0014900.1 Rosmarinic Acid C4H low borderline
Tcac07G0015770.1 Rosmarinic Acid C4H low borderline
Tcac07G0015800.1 Rosmarinic Acid C4H low borderline
Tcac07G0015820.1 Rosmarinic Acid C4H low borderline
Tcac07G0015860.1 Rosmarinic Acid C4H low borderline
Tcac07G0015870.1 Rosmarinic Acid C4H low borderline
Tcac08G0000670.1 Rosmarinic Acid C4H low borderline
Tcac08G0001520.1 Rosmarinic Acid C4H low borderline
Tcac08G0001520.2 Rosmarinic Acid C4H low borderline
Tcac08G0001620.1 Rosmarinic Acid C4H medium pass
Tcac08G0001630.1 Rosmarinic Acid C4H low borderline
Tcac08G0001640.1 Rosmarinic Acid C4H low borderline
Tcac08G0001650.1 Rosmarinic Acid C4H low borderline
Tcac08G0001660.1 Rosmarinic Acid C4H low borderline
Tcac08G0001670.1 Rosmarinic Acid C4H low borderline
Tcac08G0001670.2 Rosmarinic Acid C4H low borderline
Tcac08G0001690.1 Rosmarinic Acid C4H low borderline
Tcac08G0001700.1 Rosmarinic Acid C4H low borderline
Tcac08G0001710.1 Rosmarinic Acid C4H low borderline
Tcac08G0001720.1 Rosmarinic Acid C4H low borderline
Tcac08G0001730.1 Rosmarinic Acid C4H low borderline
Tcac08G0001740.1 Rosmarinic Acid C4H low borderline
Tcac08G0001750.1 Rosmarinic Acid C4H medium pass
Tcac08G0001760.1 Rosmarinic Acid C4H low borderline
Tcac08G0001770.1 Rosmarinic Acid C4H low borderline
Tcac08G0001790.1 Rosmarinic Acid C4H low borderline
Tcac08G0002230.1 Rosmarinic Acid C4H low borderline
Tcac08G0003010.1 Rosmarinic Acid C4H low borderline
Tcac08G0003030.1 Rosmarinic Acid C4H low borderline
Tcac08G0003030.2 Rosmarinic Acid C4H low borderline
Tcac08G0003780.1 Rosmarinic Acid C4H low borderline
Tcac08G0003790.1 Rosmarinic Acid C4H medium pass
Tcac08G0003800.1 Rosmarinic Acid C4H low borderline
Tcac08G0003810.1 Rosmarinic Acid C4H low borderline
Tcac08G0003820.1 Rosmarinic Acid C4H low borderline
Tcac08G0003830.1 Rosmarinic Acid C4H low borderline
Tcac08G0003850.1 Rosmarinic Acid C4H low borderline
Tcac08G0003860.1 Rosmarinic Acid C4H low borderline
Tcac08G0003870.1 Rosmarinic Acid C4H medium pass
Tcac08G0003890.1 Rosmarinic Acid C4H medium pass
Tcac08G0003900.1 Rosmarinic Acid C4H medium pass
Tcac08G0005940.1 Rosmarinic Acid C4H low borderline
Tcac08G0008880.1 Rosmarinic Acid C4H medium pass
Tcac08G0008880.2 Rosmarinic Acid C4H medium pass
Tcac08G0008890.1 Rosmarinic Acid C4H low borderline
Tcac08G0008900.1 Rosmarinic Acid C4H medium pass
Tcac08G0008960.1 Rosmarinic Acid C4H low borderline
Tcac08G0008970.1 Rosmarinic Acid C4H medium pass