PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
Tcac08G0008980.1 Rosmarinic Acid C4H low borderline
Tcac08G0008980.2 Rosmarinic Acid C4H low borderline
Tcac08G0009060.1 Rosmarinic Acid C4H low borderline
Tcac08G0009070.1 Rosmarinic Acid C4H low borderline
Tcac08G0009080.1 Rosmarinic Acid C4H medium pass
Tcac08G0009090.1 Rosmarinic Acid C4H low borderline
Tcac08G0009100.1 Rosmarinic Acid C4H medium pass
Tcac08G0009110.1 Rosmarinic Acid C4H low borderline
Tcac08G0014210.1 Rosmarinic Acid C4H low borderline
Tcac08G0014780.1 Rosmarinic Acid C4H low borderline
Tcac08G0015200.1 Rosmarinic Acid C4H low borderline
Tcac08G0017390.1 Rosmarinic Acid C4H low borderline
Tcac08G0017590.1 Rosmarinic Acid C4H low borderline
Tcac08G0017600.1 Rosmarinic Acid C4H medium pass
Tcac08G0018240.1 Rosmarinic Acid C4H low borderline
Tcac08G0018350.1 Rosmarinic Acid C4H low borderline
Tcac09G0000060.1 Rosmarinic Acid C4H low borderline
Tcac09G0000060.2 Rosmarinic Acid C4H low borderline
Tcac09G0000850.1 Rosmarinic Acid C4H low borderline
Tcac09G0002270.2 Rosmarinic Acid C4H low borderline
Tcac09G0005540.1 Rosmarinic Acid C4H low borderline
Tcac09G0007490.1 Rosmarinic Acid C4H low borderline
Tcac09G0007490.2 Rosmarinic Acid C4H medium pass
Tcac09G0007790.1 Rosmarinic Acid C4H low borderline
Tcac09G0011810.1 Rosmarinic Acid C4H low borderline
Tcac09G0018380.1 Rosmarinic Acid C4H medium pass
Tcac09G0019070.1 Rosmarinic Acid C4H low borderline
Tcac09G0020590.1 Rosmarinic Acid C4H low borderline
Tcac09G0020590.2 Rosmarinic Acid C4H low borderline
Tcac09G0022610.1 Rosmarinic Acid C4H low borderline
Tcac09G0026460.1 Rosmarinic Acid C4H low borderline
Tcac09G0028760.1 Rosmarinic Acid C4H low borderline
Tcac09G0028770.1 Rosmarinic Acid C4H low borderline
Tcac09G0029540.1 Rosmarinic Acid C4H low borderline
Tcac09G0030250.1 Rosmarinic Acid C4H low borderline
Tcac09G0033920.1 Rosmarinic Acid C4H low borderline
Tcac09G0033950.1 Rosmarinic Acid C4H medium pass
Tcac09G0034140.1 Rosmarinic Acid C4H low borderline
Tcac10G0000010.1 Rosmarinic Acid C4H low borderline
Tcac10G0000010.2 Rosmarinic Acid C4H low borderline
Tcac10G0001970.1 Rosmarinic Acid C4H low borderline
Tcac10G0009500.1 Rosmarinic Acid C4H low borderline
Tcac10G0009530.1 Rosmarinic Acid C4H low borderline
Tcac10G0010240.1 Rosmarinic Acid C4H low borderline
Tcac10G0011250.1 Rosmarinic Acid C4H low borderline
Tcac10G0011840.1 Rosmarinic Acid C4H low borderline
Tcac10G0011840.2 Rosmarinic Acid C4H low borderline
Tcac10G0012610.1 Rosmarinic Acid C4H low borderline
Tcac10G0012610.2 Rosmarinic Acid C4H low borderline
Tcac10G0014090.1 Rosmarinic Acid C4H low borderline