PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Tcac06G0018850.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac06G0018890.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0001490.1 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Tcac07G0005500.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0005520.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0005550.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0005560.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0005570.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0005580.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0010450.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0010470.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0010490.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0015790.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0015790.2 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0015830.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0015910.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0015920.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0017510.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0017530.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0017540.1 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0017610.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0017610.2 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac07G0017610.3 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Tcac08G0016070.1 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Tcac08G0016070.2 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Tcac08G0016400.1 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Tcac08G0016410.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Tcac09G0018780.1 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Tcac09G0018780.2 Steroid CAS medium pass CAS__00005__sp_P38605_CAS1_ARATH
Tcac09G0019490.1 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Tcac09G0019490.2 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Tcac10G0009090.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA