PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Protein/Isoform Record Pathway Family Confidence Status
Tcac01G0002290.1 Terpenoid CYP76 medium pass
Tcac01G0002320.1 Terpenoid CYP76 medium borderline
Tcac01G0003590.1 Terpenoid CYP76 low borderline
Tcac01G0004540.1 Terpenoid CYP76 medium borderline
Tcac01G0004550.1 Terpenoid CYP76 medium pass
Tcac01G0006330.1 Terpenoid CYP76 medium pass
Tcac01G0006340.1 Terpenoid CYP76 medium pass
Tcac01G0006350.1 Terpenoid CYP76 low borderline
Tcac01G0006360.1 Terpenoid CYP76 medium pass
Tcac01G0006370.1 Terpenoid CYP76 medium pass
Tcac01G0006380.1 Terpenoid CYP76 medium borderline
Tcac01G0006380.2 Terpenoid CYP76 medium borderline
Tcac01G0006380.3 Terpenoid CYP76 medium borderline
Tcac01G0006380.4 Terpenoid CYP76 medium borderline
Tcac01G0010630.1 Terpenoid CYP76 medium borderline
Tcac01G0010840.1 Terpenoid CYP76 medium pass
Tcac01G0010980.1 Terpenoid CYP76 low borderline
Tcac01G0017080.1 Terpenoid CYP76 low borderline
Tcac01G0020700.1 Terpenoid CYP76 medium pass
Tcac01G0020720.1 Terpenoid CYP76 medium borderline
Tcac01G0020730.1 Terpenoid CYP76 medium borderline
Tcac01G0031200.1 Terpenoid CYP76 medium pass
Tcac01G0031630.1 Terpenoid CYP76 medium pass
Tcac01G0034200.1 Terpenoid CYP76 low borderline
Tcac02G0002710.1 Terpenoid CYP76 medium borderline
Tcac02G0002720.1 Terpenoid CYP76 medium pass
Tcac02G0002840.1 Terpenoid CYP76 low borderline
Tcac02G0004440.1 Terpenoid CYP76 low borderline
Tcac02G0007210.1 Terpenoid CYP76 low borderline
Tcac02G0007210.2 Terpenoid CYP76 low borderline
Tcac02G0007390.1 Terpenoid CYP76 medium borderline
Tcac02G0009340.1 Terpenoid CYP76 low borderline
Tcac02G0018380.1 Terpenoid CYP76 low borderline
Tcac02G0018380.2 Terpenoid CYP76 low borderline
Tcac02G0019820.1 Terpenoid CYP76 low borderline
Tcac02G0024120.1 Terpenoid CYP76 medium borderline
Tcac02G0024130.1 Terpenoid CYP76 medium borderline
Tcac02G0024260.1 Terpenoid CYP76 low borderline
Tcac02G0029660.1 Terpenoid CYP76 low borderline
Tcac02G0029940.1 Terpenoid CYP76 low borderline
Tcac02G0030080.1 Terpenoid CYP76 medium borderline
Tcac03G0003000.1 Terpenoid CYP76 medium borderline
Tcac03G0003010.1 Terpenoid CYP76 medium pass
Tcac03G0003020.1 Terpenoid CYP76 medium borderline
Tcac03G0003050.1 Terpenoid CYP76 medium borderline
Tcac03G0003070.1 Terpenoid CYP76 medium borderline
Tcac03G0003080.1 Terpenoid CYP76 medium borderline
Tcac03G0003120.1 Terpenoid CYP76 medium borderline
Tcac03G0006220.1 Terpenoid CYP76 low borderline
Tcac03G0006220.2 Terpenoid CYP76 low borderline