PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Tcac01G0002290.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0004540.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006330.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006350.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006360.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006370.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.2 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.3 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.4 Steroid DWF4/CYP90B1 low borderline
Tcac01G0010630.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0012710.4 Steroid DWF4/CYP90B1 low borderline
Tcac01G0014980.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0015530.1 Steroid DWF4/CYP90B1 medium borderline
Tcac01G0016660.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0018470.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0018470.2 Steroid DWF4/CYP90B1 low borderline
Tcac01G0030230.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0030230.2 Steroid DWF4/CYP90B1 low borderline
Tcac01G0031630.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034750.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034760.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034760.2 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034770.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034770.2 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034770.3 Steroid DWF4/CYP90B1 low borderline
Tcac01G0034780.1 Steroid DWF4/CYP90B1 low borderline
Tcac02G0004440.1 Steroid DWF4/CYP90B1 medium borderline
Tcac02G0009340.1 Steroid DWF4/CYP90B1 low borderline
Tcac02G0009350.1 Steroid DWF4/CYP90B1 low borderline
Tcac02G0009790.1 Steroid DWF4/CYP90B1 medium borderline
Tcac02G0009790.2 Steroid DWF4/CYP90B1 medium borderline
Tcac02G0024150.1 Steroid DWF4/CYP90B1 low borderline
Tcac02G0029940.1 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0003110.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0003120.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0006220.1 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0006220.2 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0006220.3 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0006220.4 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0006220.5 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0006220.6 Steroid DWF4/CYP90B1 medium borderline
Tcac03G0008430.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0009920.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0009940.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0010940.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0014000.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0014010.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0014060.1 Steroid DWF4/CYP90B1 low borderline
Tcac03G0014420.1 Steroid DWF4/CYP90B1 low borderline