PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Tcac04G0023070.1 Flavonoid F3H medium borderline
Tcac04G0023070.2 Flavonoid F3H medium borderline
Tcac04G0023080.1 Flavonoid F3H medium borderline
Tcac04G0023080.10 Flavonoid F3H medium borderline
Tcac04G0023080.11 Flavonoid F3H medium borderline
Tcac04G0023080.12 Flavonoid F3H medium borderline
Tcac04G0023080.2 Flavonoid F3H medium borderline
Tcac04G0023080.3 Flavonoid F3H medium borderline
Tcac04G0023080.4 Flavonoid F3H medium borderline
Tcac04G0023080.5 Flavonoid F3H medium borderline
Tcac04G0023080.6 Flavonoid F3H medium borderline
Tcac04G0023080.7 Flavonoid F3H medium borderline
Tcac04G0023080.8 Flavonoid F3H medium borderline
Tcac04G0023080.9 Flavonoid F3H medium borderline
Tcac04G0025960.1 Flavonoid F3H medium borderline
Tcac04G0028350.1 Flavonoid F3H medium borderline
Tcac05G0001470.1 Flavonoid F3H medium borderline
Tcac05G0003490.1 Flavonoid F3H medium borderline
Tcac05G0007270.1 Flavonoid F3H medium borderline
Tcac05G0008920.1 Flavonoid F3H medium borderline
Tcac05G0008930.1 Flavonoid F3H medium borderline
Tcac05G0008930.2 Flavonoid F3H medium borderline
Tcac05G0016630.1 Flavonoid F3H medium borderline
Tcac05G0017290.1 Flavonoid F3H medium borderline
Tcac05G0017290.2 Flavonoid F3H medium borderline
Tcac05G0017310.1 Flavonoid F3H medium borderline
Tcac05G0024700.1 Flavonoid F3H medium borderline
Tcac06G0002990.1 Flavonoid F3H medium borderline
Tcac06G0002990.2 Flavonoid F3H medium borderline
Tcac06G0002990.3 Flavonoid F3H medium borderline
Tcac06G0006720.1 Flavonoid F3H low borderline
Tcac06G0006730.1 Flavonoid F3H low borderline
Tcac06G0006740.1 Flavonoid F3H low borderline
Tcac06G0006750.1 Flavonoid F3H low borderline
Tcac06G0006790.1 Flavonoid F3H low borderline
Tcac06G0006800.1 Flavonoid F3H medium borderline
Tcac06G0008670.1 Flavonoid F3H low borderline
Tcac06G0014140.1 Flavonoid F3H medium borderline
Tcac06G0014150.1 Flavonoid F3H medium borderline
Tcac06G0014150.2 Flavonoid F3H medium borderline
Tcac06G0014180.1 Flavonoid F3H medium borderline
Tcac06G0014200.1 Flavonoid F3H medium borderline
Tcac06G0018700.1 Flavonoid F3H low borderline
Tcac06G0019510.1 Flavonoid F3H medium borderline
Tcac06G0019510.2 Flavonoid F3H medium borderline
Tcac06G0019510.3 Flavonoid F3H medium borderline
Tcac06G0021040.1 Flavonoid F3H medium borderline
Tcac06G0021040.2 Flavonoid F3H medium borderline
Tcac07G0005060.1 Flavonoid F3H medium borderline
Tcac07G0005080.1 Flavonoid F3H medium borderline