PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status Best Target
Tcac07G0005090.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0005090.2 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0005090.3 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0009670.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0013050.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0013070.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0013080.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0013100.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0013110.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0013110.2 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0014340.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac07G0014350.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac07G0014370.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac07G0014390.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac07G0016310.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac08G0006210.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac08G0011560.1 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Tcac08G0011580.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac08G0011580.2 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac08G0011580.3 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac08G0012710.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac08G0012990.1 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac08G0013120.1 Flavonoid F3H medium borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
Tcac08G0013130.1 Flavonoid F3H medium borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
Tcac09G0008980.1 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Tcac09G0008980.2 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Tcac09G0011510.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac09G0013320.1 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Tcac09G0013330.1 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Tcac09G0013340.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac09G0013510.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0013530.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0013530.2 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0014180.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0014210.1 Flavonoid F3H low borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac09G0014260.1 Flavonoid F3H low borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Tcac09G0019420.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0019430.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0019440.1 Flavonoid F3H low borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Tcac09G0023050.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac09G0027640.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac09G0027650.1 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac09G0027650.2 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac10G0001500.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac10G0003680.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac10G0003690.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac10G0003710.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Tcac10G0003720.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Tcac10G0003720.2 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN