PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status
Tcac05G0019990.2 Flavonoid F3'H/CYP75B medium borderline
Tcac05G0020010.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001700.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001710.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001730.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001740.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001750.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001770.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001770.2 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0001780.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0013580.1 Flavonoid F3'H/CYP75B low borderline
Tcac07G0013590.1 Flavonoid F3'H/CYP75B low borderline
Tcac07G0015770.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0015800.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0015820.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0015860.1 Flavonoid F3'H/CYP75B medium borderline
Tcac07G0015870.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0001640.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0001650.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0001720.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0002230.1 Flavonoid F3'H/CYP75B low borderline
Tcac08G0003800.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0003820.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0003850.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0003860.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0005940.1 Flavonoid F3'H/CYP75B medium borderline
Tcac08G0018350.1 Flavonoid F3'H/CYP75B medium borderline
Tcac09G0000850.1 Flavonoid F3'H/CYP75B low borderline
Tcac09G0011810.1 Flavonoid F3'H/CYP75B low borderline
Tcac09G0018380.1 Flavonoid F3'H/CYP75B medium borderline
Tcac09G0020590.2 Flavonoid F3'H/CYP75B medium borderline
Tcac09G0033920.1 Flavonoid F3'H/CYP75B medium borderline
Tcac10G0009500.1 Flavonoid F3'H/CYP75B low borderline
Tcac10G0011840.1 Flavonoid F3'H/CYP75B low borderline
Tcac10G0011840.2 Flavonoid F3'H/CYP75B low borderline
Tcac10G0014100.1 Flavonoid F3'H/CYP75B medium borderline
Tcac10G0016350.1 Flavonoid F3'H/CYP75B medium borderline
Tcac10G0016370.1 Flavonoid F3'H/CYP75B medium borderline
Tcac10G0016460.1 Flavonoid F3'H/CYP75B medium borderline
Tcac10G0016480.1 Flavonoid F3'H/CYP75B medium borderline
Tcac10G0017160.1 Flavonoid F3'H/CYP75B low borderline
Tcac10G0017170.1 Flavonoid F3'H/CYP75B low borderline
Tcac10G0017170.2 Flavonoid F3'H/CYP75B low borderline
Tcac10G0017170.3 Flavonoid F3'H/CYP75B low borderline