PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Protein/Isoform Record Pathway Family Confidence Status
Tcac01G0001790.1 Alkaloid H6H low borderline
Tcac01G0001810.1 Alkaloid H6H high pass
Tcac01G0005980.1 Alkaloid H6H low borderline
Tcac01G0005990.1 Alkaloid H6H low borderline
Tcac01G0016460.1 Alkaloid H6H low borderline
Tcac01G0016460.2 Alkaloid H6H low borderline
Tcac01G0023930.1 Alkaloid H6H medium borderline
Tcac01G0023940.1 Alkaloid H6H medium borderline
Tcac01G0023940.2 Alkaloid H6H medium borderline
Tcac01G0024080.1 Alkaloid H6H low borderline
Tcac01G0025090.1 Alkaloid H6H low borderline
Tcac01G0025090.2 Alkaloid H6H low borderline
Tcac01G0029500.1 Alkaloid H6H low borderline
Tcac01G0030770.1 Alkaloid H6H medium borderline
Tcac02G0009100.1 Alkaloid H6H medium borderline
Tcac02G0012870.1 Alkaloid H6H medium borderline
Tcac02G0023780.1 Alkaloid H6H medium borderline
Tcac03G0013280.1 Alkaloid H6H low borderline
Tcac03G0018850.1 Alkaloid H6H medium borderline
Tcac03G0019530.1 Alkaloid H6H medium borderline
Tcac03G0025570.1 Alkaloid H6H low borderline
Tcac04G0022950.1 Alkaloid H6H medium pass
Tcac04G0022960.1 Alkaloid H6H low borderline
Tcac04G0022980.1 Alkaloid H6H medium borderline
Tcac04G0023010.1 Alkaloid H6H low borderline
Tcac04G0023030.1 Alkaloid H6H low borderline
Tcac04G0023040.1 Alkaloid H6H medium borderline
Tcac04G0023060.1 Alkaloid H6H medium borderline
Tcac04G0023080.11 Alkaloid H6H low borderline
Tcac04G0023080.12 Alkaloid H6H low borderline
Tcac04G0023080.4 Alkaloid H6H low borderline
Tcac04G0023080.5 Alkaloid H6H low borderline
Tcac04G0023080.7 Alkaloid H6H low borderline
Tcac04G0023080.8 Alkaloid H6H low borderline
Tcac04G0025960.1 Alkaloid H6H medium borderline
Tcac05G0016630.1 Alkaloid H6H medium borderline
Tcac06G0006720.1 Alkaloid H6H low borderline
Tcac06G0006730.1 Alkaloid H6H low borderline
Tcac06G0006740.1 Alkaloid H6H low borderline
Tcac06G0006750.1 Alkaloid H6H low borderline
Tcac06G0006790.1 Alkaloid H6H low borderline
Tcac06G0008420.1 Alkaloid H6H low borderline
Tcac06G0008670.1 Alkaloid H6H low borderline
Tcac06G0021040.1 Alkaloid H6H medium borderline
Tcac06G0021040.2 Alkaloid H6H medium borderline
Tcac07G0014070.1 Alkaloid H6H medium borderline
Tcac07G0016310.1 Alkaloid H6H medium borderline
Tcac08G0012710.1 Alkaloid H6H medium borderline
Tcac08G0012990.1 Alkaloid H6H medium pass
Tcac08G0013130.1 Alkaloid H6H low borderline