PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status
Tcac01G0030000.1 Phenylpropanoid HCT low borderline
Tcac02G0013340.1 Phenylpropanoid HCT medium pass
Tcac02G0024740.1 Phenylpropanoid HCT low borderline
Tcac02G0024750.1 Phenylpropanoid HCT low borderline
Tcac02G0024770.1 Phenylpropanoid HCT low borderline
Tcac02G0024810.1 Phenylpropanoid HCT low borderline
Tcac02G0024820.1 Phenylpropanoid HCT low borderline
Tcac02G0024830.1 Phenylpropanoid HCT low borderline
Tcac03G0010530.1 Phenylpropanoid HCT low borderline
Tcac03G0010570.1 Phenylpropanoid HCT low borderline
Tcac03G0011560.1 Phenylpropanoid HCT medium pass
Tcac03G0011560.2 Phenylpropanoid HCT medium pass
Tcac03G0021010.1 Phenylpropanoid HCT low borderline
Tcac04G0003960.1 Phenylpropanoid HCT medium pass
Tcac04G0014220.1 Phenylpropanoid HCT medium pass
Tcac04G0014220.2 Phenylpropanoid HCT medium pass
Tcac04G0017620.1 Phenylpropanoid HCT low borderline
Tcac05G0002000.1 Phenylpropanoid HCT low borderline
Tcac05G0005730.1 Phenylpropanoid HCT medium pass
Tcac05G0005740.1 Phenylpropanoid HCT medium pass
Tcac05G0005760.1 Phenylpropanoid HCT medium pass
Tcac05G0005770.1 Phenylpropanoid HCT medium pass
Tcac05G0005780.1 Phenylpropanoid HCT medium pass
Tcac05G0005810.1 Phenylpropanoid HCT medium pass
Tcac05G0005810.2 Phenylpropanoid HCT medium pass
Tcac05G0005810.3 Phenylpropanoid HCT medium pass
Tcac05G0005820.1 Phenylpropanoid HCT medium pass
Tcac05G0005830.1 Phenylpropanoid HCT medium pass
Tcac05G0010400.1 Phenylpropanoid HCT low borderline
Tcac05G0015630.1 Phenylpropanoid HCT low borderline
Tcac05G0015650.1 Phenylpropanoid HCT low borderline
Tcac05G0020150.1 Phenylpropanoid HCT low borderline
Tcac05G0020160.1 Phenylpropanoid HCT medium pass
Tcac05G0020170.1 Phenylpropanoid HCT medium pass
Tcac05G0020180.1 Phenylpropanoid HCT medium pass
Tcac05G0020190.1 Phenylpropanoid HCT medium pass
Tcac05G0020210.1 Phenylpropanoid HCT medium pass
Tcac05G0020220.1 Phenylpropanoid HCT medium pass
Tcac05G0020230.1 Phenylpropanoid HCT medium pass
Tcac05G0020240.1 Phenylpropanoid HCT medium pass
Tcac05G0020250.1 Phenylpropanoid HCT low borderline
Tcac06G0004130.1 Phenylpropanoid HCT medium pass
Tcac06G0014540.1 Phenylpropanoid HCT low borderline
Tcac06G0014540.2 Phenylpropanoid HCT low borderline
Tcac06G0014540.3 Phenylpropanoid HCT low borderline
Tcac06G0014540.4 Phenylpropanoid HCT low borderline
Tcac06G0014540.5 Phenylpropanoid HCT low borderline
Tcac08G0003130.1 Phenylpropanoid HCT low borderline
Tcac08G0005590.1 Phenylpropanoid HCT low borderline
Tcac09G0002690.1 Phenylpropanoid HCT medium pass