PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Protein/Isoform Record Pathway Family Confidence Status
Tcac03G0003050.1 Flavonoid IFS medium borderline
Tcac03G0003070.1 Flavonoid IFS medium borderline
Tcac03G0003100.1 Flavonoid IFS medium borderline
Tcac03G0003110.1 Flavonoid IFS medium borderline
Tcac03G0003120.1 Flavonoid IFS medium borderline
Tcac03G0009860.1 Flavonoid IFS medium borderline
Tcac03G0009860.2 Flavonoid IFS medium borderline
Tcac03G0009870.1 Flavonoid IFS medium borderline
Tcac03G0009890.1 Flavonoid IFS low borderline
Tcac03G0009910.1 Flavonoid IFS medium borderline
Tcac03G0009920.1 Flavonoid IFS medium borderline
Tcac03G0009940.1 Flavonoid IFS medium borderline
Tcac03G0010940.1 Flavonoid IFS low borderline
Tcac03G0014000.1 Flavonoid IFS medium borderline
Tcac03G0014010.1 Flavonoid IFS medium borderline
Tcac03G0014020.1 Flavonoid IFS medium borderline
Tcac03G0014420.1 Flavonoid IFS low borderline
Tcac03G0014440.1 Flavonoid IFS low borderline
Tcac03G0015820.1 Flavonoid IFS low borderline
Tcac03G0020980.1 Flavonoid IFS low borderline
Tcac03G0023550.1 Flavonoid IFS low borderline
Tcac03G0023660.1 Flavonoid IFS medium borderline
Tcac03G0023670.1 Flavonoid IFS medium borderline
Tcac03G0023690.1 Flavonoid IFS medium borderline
Tcac03G0023690.2 Flavonoid IFS medium borderline
Tcac03G0023710.1 Flavonoid IFS medium borderline
Tcac03G0024240.1 Flavonoid IFS medium borderline
Tcac03G0024250.1 Flavonoid IFS medium borderline
Tcac03G0024850.1 Flavonoid IFS low borderline
Tcac03G0025750.1 Flavonoid IFS low borderline
Tcac03G0028830.1 Flavonoid IFS medium borderline
Tcac03G0028840.1 Flavonoid IFS medium borderline
Tcac03G0029480.1 Flavonoid IFS low borderline
Tcac04G0001570.1 Flavonoid IFS medium borderline
Tcac04G0009980.1 Flavonoid IFS medium borderline
Tcac04G0010010.1 Flavonoid IFS medium borderline
Tcac04G0010030.1 Flavonoid IFS medium borderline
Tcac04G0010040.1 Flavonoid IFS medium borderline
Tcac04G0010050.1 Flavonoid IFS medium borderline
Tcac04G0012240.1 Flavonoid IFS medium borderline
Tcac04G0018390.1 Flavonoid IFS low borderline
Tcac04G0018400.1 Flavonoid IFS low borderline
Tcac04G0022780.1 Flavonoid IFS low borderline
Tcac04G0022780.2 Flavonoid IFS low borderline
Tcac04G0024250.1 Flavonoid IFS low borderline
Tcac05G0007250.1 Flavonoid IFS low borderline
Tcac05G0007670.1 Flavonoid IFS medium borderline
Tcac05G0007680.1 Flavonoid IFS medium borderline
Tcac05G0008230.1 Flavonoid IFS low borderline
Tcac05G0014190.1 Flavonoid IFS medium borderline