PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Tcac03G0021980.4 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Tcac03G0021980.5 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Tcac03G0022940.1 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Tcac03G0022940.2 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Tcac03G0025420.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tcac04G0000680.1 Alkaloid NMT medium borderline NMT__00029__sp_Q42963_PMT1_TOBAC
Tcac04G0004570.1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Tcac04G0004570.2 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Tcac04G0005370.1 Alkaloid NMT low borderline NMT__00030__sp_Q43088_RBCMT_PEA
Tcac04G0005370.2 Alkaloid NMT low borderline NMT__00030__sp_Q43088_RBCMT_PEA
Tcac04G0006150.1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Tcac04G0016150.1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Tcac04G0016150.2 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Tcac04G0016150.3 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Tcac04G0023850.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023850.2 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023850.3 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023850.4 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023850.5 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023850.6 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023880.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023900.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023900.2 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023910.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023910.2 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023910.3 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023910.4 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023910.5 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023920.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023930.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0023930.2 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0024050.1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Tcac04G0024520.1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Tcac04G0026200.1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Tcac04G0026200.2 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Tcac05G0004290.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tcac05G0004290.2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tcac05G0007200.1 Alkaloid NMT medium pass NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Tcac05G0007200.2 Alkaloid NMT medium borderline NMT__00062__sp_Q9SCP7_NAMT1_ARATH
Tcac05G0007220.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tcac05G0007220.2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Tcac05G0013630.1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tcac05G0013630.2 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tcac05G0013630.3 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tcac05G0013630.4 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tcac05G0013630.5 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Tcac05G0019720.1 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Tcac05G0021640.1 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Tcac05G0021870.1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Tcac05G0024020.1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH