Theobroma cacao (theobroma_cacao)
Imported from atlas release summary for Theobroma cacao.
2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5264
Family-Level Calls
C4H
6.52%
C3'H/CYP98A
6.0%
BAHD
5.85%
CYP76
3.91%
POD
3.82%
IFS
3.78%
UFGT
3.67%
UGT
3.61%
Other Families
62.84%
More Families (96)
7DLGT
184
3.5%
T3O
177
3.36%
4CL
159
3.02%
NMT
155
2.94%
F3H
149
2.83%
DWF4/CYP90B1
143
2.72%
STR
123
2.34%
F3'H/CYP75B
94
1.79%
CAD
94
1.79%
CODM/T6ODM
93
1.77%
CAS
82
1.56%
BR6OX2/CYP85A2
78
1.48%
CYP71
72
1.37%
SMT1/SMT2/SMT3
71
1.35%
HCT
65
1.23%
CYP90D1
59
1.12%
TPS
58
1.1%
H6H
56
1.06%
GES
56
1.06%
G8O/G8H
55
1.04%
TRI/TRII
55
1.04%
TAT
47
0.89%
SGD
46
0.87%
BBE
46
0.87%
RAS
46
0.87%
LAC
45
0.85%
T16H
43
0.82%
IFR
43
0.82%
GS
42
0.8%
PMT
42
0.8%
LAMT
40
0.76%
FNS
36
0.68%
IO
35
0.66%
CSE
35
0.66%
COMT
33
0.63%
PYKS
32
0.61%
ANR
32
0.61%
8HGO
31
0.59%
NCS
31
0.59%
7DLH
30
0.57%
F3'5'H/CYP75A
30
0.57%
16OMT
23
0.44%
COR
22
0.42%
BR6OX1/CYP85A1
22
0.42%
SLS
21
0.4%
CCR
21
0.4%
PAL
20
0.38%
F5H/CYP84A
20
0.38%
CPD/CYP90A1
20
0.38%
CNMT
18
0.34%
CYP51G1
16
0.3%
DFR
14
0.27%
CCoAOMT
14
0.27%
FPPS
14
0.27%
MPO
13
0.25%
ANS/LDOX
13
0.25%
CHS
13
0.25%
SQE
13
0.25%
GGPPS
13
0.25%
DXS
12
0.23%
HPPR
11
0.21%
SQS/FDFT1
10
0.19%
ROT3/CYP90C1
8
0.15%
DET2
8
0.15%
TYDC_DDC
7
0.13%
CYP80B1
7
0.13%
CHI
7
0.13%
SMO1/SMO2
7
0.13%
XMT_MXMT_DXMT
6
0.11%
ODC
6
0.11%
CPR
6
0.11%
AACT
6
0.11%
MVK
6
0.11%
ISY
5
0.09%
FK
4
0.08%
HMGR
4
0.08%
CYP719
3
0.06%
DXR
3
0.06%
HMGS
3
0.06%
MVD
3
0.06%
ADC
2
0.04%
6OMT_4OMT_SOMT
2
0.04%
TDC
2
0.04%
FLS
2
0.04%
DWF1
2
0.04%
MCT/IspD
2
0.04%
HDS/IspG
2
0.04%
HYD1
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
IDI
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 617 | 19 | BAHD (254) | View species results |
| Alkaloid pathway | 471 | 22 | 7DLGT (91) | View species results |
| Phenylpropanoid pathway | 442 | 11 | POD (197) | View species results |
| Flavonoid pathway | 246 | 9 | UFGT (165) | View species results |
| Rosmarinic acid pathway | 193 | 7 | C4H (70) | View species results |
| Steroid pathway | 140 | 13 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1997 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 419 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Tcac05G0024020.2 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Tcac05G0024020.3 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Tcac05G0024020.4 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Tcac05G0024020.5 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Tcac05G0024020.6 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Tcac05G0024020.7 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Tcac06G0000030.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Tcac06G0000030.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Tcac06G0000840.1 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Tcac06G0003840.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Tcac06G0005110.1 | Alkaloid | NMT | low | borderline | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Tcac06G0022180.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac07G0002720.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Tcac07G0013040.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0003020.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Tcac08G0003020.2 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Tcac08G0003040.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Tcac08G0004980.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Tcac08G0009270.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Tcac08G0009270.2 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Tcac08G0011210.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.4 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.5 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.6 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.7 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.8 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0011210.9 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac08G0012770.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Tcac08G0012770.2 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Tcac08G0014880.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Tcac09G0000160.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Tcac09G0000160.2 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Tcac09G0001950.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac09G0001950.4 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac09G0001950.5 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac09G0001950.6 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Tcac09G0006870.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Tcac09G0009140.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Tcac09G0009140.2 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Tcac09G0011860.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Tcac09G0015050.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Tcac09G0021770.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Tcac09G0021790.1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Tcac09G0027420.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Tcac10G0002340.1 | Alkaloid | NMT | low | borderline | NMT__00052__sp_Q9AVJ9_MXMT1_COFAR |
| Tcac10G0002410.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Tcac10G0002410.2 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Tcac10G0002410.3 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |