PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status
Tcac04G0021830.8 Phenylpropanoid POD medium pass
Tcac04G0023420.2 Phenylpropanoid POD low borderline
Tcac04G0025230.1 Phenylpropanoid POD medium pass
Tcac04G0025240.1 Phenylpropanoid POD medium pass
Tcac04G0026140.1 Phenylpropanoid POD medium pass
Tcac04G0027870.1 Phenylpropanoid POD medium pass
Tcac04G0028080.1 Phenylpropanoid POD medium pass
Tcac04G0028640.1 Phenylpropanoid POD medium pass
Tcac05G0000340.1 Phenylpropanoid POD medium pass
Tcac05G0000340.2 Phenylpropanoid POD medium pass
Tcac05G0005180.1 Phenylpropanoid POD medium pass
Tcac05G0005180.2 Phenylpropanoid POD medium pass
Tcac05G0005180.3 Phenylpropanoid POD medium pass
Tcac05G0005180.4 Phenylpropanoid POD medium pass
Tcac05G0005510.1 Phenylpropanoid POD low borderline
Tcac05G0007760.1 Phenylpropanoid POD medium pass
Tcac05G0008310.1 Phenylpropanoid POD medium pass
Tcac05G0008320.1 Phenylpropanoid POD medium pass
Tcac05G0008320.2 Phenylpropanoid POD medium pass
Tcac05G0009620.1 Phenylpropanoid POD medium pass
Tcac05G0015120.1 Phenylpropanoid POD medium pass
Tcac05G0021380.1 Phenylpropanoid POD medium pass
Tcac05G0021380.2 Phenylpropanoid POD medium pass
Tcac05G0029810.1 Phenylpropanoid POD medium pass
Tcac06G0007650.1 Phenylpropanoid POD medium pass
Tcac06G0008000.1 Phenylpropanoid POD medium pass
Tcac06G0008000.2 Phenylpropanoid POD medium pass
Tcac06G0012090.1 Phenylpropanoid POD low borderline
Tcac06G0012110.1 Phenylpropanoid POD medium pass
Tcac06G0012140.1 Phenylpropanoid POD medium pass
Tcac06G0015940.1 Phenylpropanoid POD medium pass
Tcac06G0020120.1 Phenylpropanoid POD medium pass
Tcac06G0020710.1 Phenylpropanoid POD medium pass
Tcac07G0004110.1 Phenylpropanoid POD medium pass
Tcac07G0015850.1 Phenylpropanoid POD medium pass
Tcac08G0003260.1 Phenylpropanoid POD medium pass
Tcac08G0003420.1 Phenylpropanoid POD medium pass
Tcac08G0003430.1 Phenylpropanoid POD medium pass
Tcac08G0003430.2 Phenylpropanoid POD medium pass
Tcac08G0004730.1 Phenylpropanoid POD medium pass
Tcac08G0012290.1 Phenylpropanoid POD medium pass
Tcac08G0012290.2 Phenylpropanoid POD medium pass
Tcac08G0013690.1 Phenylpropanoid POD medium pass
Tcac08G0014910.1 Phenylpropanoid POD medium pass
Tcac09G0000640.1 Phenylpropanoid POD medium pass
Tcac09G0001200.1 Phenylpropanoid POD medium pass
Tcac09G0001420.1 Phenylpropanoid POD medium pass
Tcac09G0002130.1 Phenylpropanoid POD medium pass
Tcac09G0002130.10 Phenylpropanoid POD medium pass
Tcac09G0002130.11 Phenylpropanoid POD medium pass