PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Tcac01G0002320.1 Alkaloid T3O medium borderline
Tcac01G0002550.1 Alkaloid T3O medium pass
Tcac01G0003590.1 Alkaloid T3O low borderline
Tcac01G0004540.1 Alkaloid T3O medium borderline
Tcac01G0004550.1 Alkaloid T3O medium borderline
Tcac01G0006360.1 Alkaloid T3O medium borderline
Tcac01G0006370.1 Alkaloid T3O medium borderline
Tcac01G0006380.1 Alkaloid T3O medium borderline
Tcac01G0006380.2 Alkaloid T3O medium borderline
Tcac01G0006380.3 Alkaloid T3O medium borderline
Tcac01G0006380.4 Alkaloid T3O medium borderline
Tcac01G0009540.1 Alkaloid T3O medium borderline
Tcac01G0009540.2 Alkaloid T3O medium borderline
Tcac01G0010630.1 Alkaloid T3O medium borderline
Tcac01G0010840.1 Alkaloid T3O medium borderline
Tcac01G0010980.1 Alkaloid T3O low borderline
Tcac01G0015530.1 Alkaloid T3O medium pass
Tcac01G0018470.1 Alkaloid T3O medium borderline
Tcac01G0018470.2 Alkaloid T3O medium borderline
Tcac01G0019180.1 Alkaloid T3O medium pass
Tcac01G0020730.1 Alkaloid T3O medium borderline
Tcac01G0024320.1 Alkaloid T3O medium pass
Tcac01G0031200.1 Alkaloid T3O medium borderline
Tcac01G0033260.1 Alkaloid T3O low borderline
Tcac01G0033260.2 Alkaloid T3O low borderline
Tcac01G0034170.1 Alkaloid T3O medium pass
Tcac01G0034200.1 Alkaloid T3O medium pass
Tcac01G0034750.1 Alkaloid T3O medium pass
Tcac01G0034780.1 Alkaloid T3O medium pass
Tcac02G0001770.1 Alkaloid T3O medium pass
Tcac02G0002720.1 Alkaloid T3O medium borderline
Tcac02G0007390.1 Alkaloid T3O medium borderline
Tcac02G0009350.1 Alkaloid T3O low borderline
Tcac02G0009360.1 Alkaloid T3O medium pass
Tcac02G0009390.1 Alkaloid T3O medium pass
Tcac02G0009790.1 Alkaloid T3O medium pass
Tcac02G0009790.2 Alkaloid T3O medium pass
Tcac02G0015460.1 Alkaloid T3O medium pass
Tcac02G0024130.1 Alkaloid T3O medium borderline
Tcac02G0024140.1 Alkaloid T3O medium borderline
Tcac02G0024150.1 Alkaloid T3O medium borderline
Tcac02G0024260.1 Alkaloid T3O medium pass
Tcac02G0024700.1 Alkaloid T3O medium borderline
Tcac02G0030080.1 Alkaloid T3O medium borderline
Tcac02G0031460.1 Alkaloid T3O low borderline
Tcac03G0003050.1 Alkaloid T3O medium borderline
Tcac03G0003100.1 Alkaloid T3O medium borderline
Tcac03G0003120.1 Alkaloid T3O medium borderline
Tcac03G0008430.1 Alkaloid T3O medium borderline
Tcac03G0009870.1 Alkaloid T3O medium borderline