PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Tcac03G0009900.1 Alkaloid T3O medium borderline
Tcac03G0009940.1 Alkaloid T3O medium borderline
Tcac03G0010940.1 Alkaloid T3O low borderline
Tcac03G0014000.1 Alkaloid T3O medium borderline
Tcac03G0014020.1 Alkaloid T3O medium borderline
Tcac03G0019970.1 Alkaloid T3O high pass
Tcac03G0020980.1 Alkaloid T3O medium pass
Tcac03G0020990.1 Alkaloid T3O medium pass
Tcac03G0023550.1 Alkaloid T3O medium pass
Tcac03G0023660.1 Alkaloid T3O medium borderline
Tcac03G0023680.1 Alkaloid T3O medium borderline
Tcac03G0023680.2 Alkaloid T3O medium borderline
Tcac03G0023680.3 Alkaloid T3O medium borderline
Tcac03G0023690.1 Alkaloid T3O medium borderline
Tcac03G0023690.2 Alkaloid T3O medium borderline
Tcac03G0023710.1 Alkaloid T3O medium borderline
Tcac03G0024240.1 Alkaloid T3O medium borderline
Tcac03G0024250.1 Alkaloid T3O medium borderline
Tcac03G0024850.1 Alkaloid T3O medium pass
Tcac03G0024850.2 Alkaloid T3O medium pass
Tcac03G0028830.1 Alkaloid T3O medium borderline
Tcac03G0028840.1 Alkaloid T3O medium borderline
Tcac03G0029480.1 Alkaloid T3O medium pass
Tcac04G0002070.1 Alkaloid T3O medium pass
Tcac04G0003360.1 Alkaloid T3O low borderline
Tcac04G0009020.1 Alkaloid T3O medium pass
Tcac04G0009980.1 Alkaloid T3O medium borderline
Tcac04G0010010.1 Alkaloid T3O medium borderline
Tcac04G0010040.1 Alkaloid T3O medium borderline
Tcac04G0010050.1 Alkaloid T3O medium borderline
Tcac04G0010810.1 Alkaloid T3O medium borderline
Tcac04G0010820.1 Alkaloid T3O medium borderline
Tcac04G0013650.1 Alkaloid T3O medium borderline
Tcac04G0019930.1 Alkaloid T3O medium borderline
Tcac05G0008230.1 Alkaloid T3O low borderline
Tcac05G0011020.1 Alkaloid T3O medium borderline
Tcac05G0014190.1 Alkaloid T3O medium borderline
Tcac05G0014460.1 Alkaloid T3O medium borderline
Tcac05G0014460.2 Alkaloid T3O medium borderline
Tcac05G0014480.1 Alkaloid T3O medium borderline
Tcac05G0014490.1 Alkaloid T3O medium borderline
Tcac05G0014500.1 Alkaloid T3O medium borderline
Tcac05G0014500.2 Alkaloid T3O medium borderline
Tcac05G0014510.1 Alkaloid T3O medium borderline
Tcac05G0014520.1 Alkaloid T3O medium borderline
Tcac05G0017940.1 Alkaloid T3O medium pass
Tcac05G0017940.2 Alkaloid T3O medium pass
Tcac05G0017940.3 Alkaloid T3O medium pass
Tcac05G0017940.4 Alkaloid T3O medium pass
Tcac05G0017940.5 Alkaloid T3O medium pass