PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Tcac05G0017940.6 Alkaloid T3O medium pass
Tcac05G0017940.7 Alkaloid T3O medium pass
Tcac05G0019850.1 Alkaloid T3O medium borderline
Tcac06G0004790.1 Alkaloid T3O medium pass
Tcac06G0004800.1 Alkaloid T3O medium pass
Tcac06G0010540.1 Alkaloid T3O medium borderline
Tcac06G0013480.1 Alkaloid T3O medium pass
Tcac06G0013480.2 Alkaloid T3O medium pass
Tcac06G0019920.1 Alkaloid T3O low borderline
Tcac07G0001700.1 Alkaloid T3O medium borderline
Tcac07G0001730.1 Alkaloid T3O medium borderline
Tcac07G0001740.1 Alkaloid T3O medium borderline
Tcac07G0001750.1 Alkaloid T3O medium borderline
Tcac07G0001760.1 Alkaloid T3O medium borderline
Tcac07G0001770.1 Alkaloid T3O medium borderline
Tcac07G0001770.2 Alkaloid T3O medium borderline
Tcac07G0001780.1 Alkaloid T3O medium borderline
Tcac07G0004190.1 Alkaloid T3O medium pass
Tcac07G0014900.1 Alkaloid T3O medium borderline
Tcac07G0015800.1 Alkaloid T3O medium borderline
Tcac07G0015820.1 Alkaloid T3O medium borderline
Tcac07G0015860.1 Alkaloid T3O medium borderline
Tcac07G0015870.1 Alkaloid T3O medium borderline
Tcac08G0001620.1 Alkaloid T3O medium borderline
Tcac08G0001630.1 Alkaloid T3O medium borderline
Tcac08G0001660.1 Alkaloid T3O medium borderline
Tcac08G0001670.1 Alkaloid T3O medium borderline
Tcac08G0001690.1 Alkaloid T3O medium borderline
Tcac08G0001710.1 Alkaloid T3O medium borderline
Tcac08G0001730.1 Alkaloid T3O medium borderline
Tcac08G0001740.1 Alkaloid T3O medium borderline
Tcac08G0001750.1 Alkaloid T3O medium borderline
Tcac08G0001760.1 Alkaloid T3O medium borderline
Tcac08G0003010.1 Alkaloid T3O medium pass
Tcac08G0003030.1 Alkaloid T3O medium pass
Tcac08G0003030.2 Alkaloid T3O medium pass
Tcac08G0003790.1 Alkaloid T3O medium borderline
Tcac08G0003810.1 Alkaloid T3O medium borderline
Tcac08G0003830.1 Alkaloid T3O medium borderline
Tcac08G0003860.1 Alkaloid T3O medium borderline
Tcac08G0003870.1 Alkaloid T3O medium borderline
Tcac08G0003890.1 Alkaloid T3O medium borderline
Tcac08G0003900.1 Alkaloid T3O medium borderline
Tcac08G0005680.1 Alkaloid T3O low borderline
Tcac08G0008900.1 Alkaloid T3O medium borderline
Tcac08G0008960.1 Alkaloid T3O medium borderline
Tcac08G0008970.1 Alkaloid T3O medium borderline
Tcac08G0009060.1 Alkaloid T3O medium borderline
Tcac08G0009080.1 Alkaloid T3O medium borderline
Tcac08G0009100.1 Alkaloid T3O medium borderline