PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Tcac02G0010530.1 Flavonoid UFGT medium pass
Tcac02G0012330.1 Flavonoid UFGT high pass
Tcac02G0013110.1 Flavonoid UFGT high pass
Tcac02G0013110.2 Flavonoid UFGT high pass
Tcac02G0013120.1 Flavonoid UFGT medium pass
Tcac02G0013130.1 Flavonoid UFGT high pass
Tcac02G0013360.1 Flavonoid UFGT low borderline
Tcac02G0013390.1 Flavonoid UFGT high pass
Tcac02G0022230.1 Flavonoid UFGT medium pass
Tcac02G0028160.1 Flavonoid UFGT medium pass
Tcac02G0028160.2 Flavonoid UFGT medium pass
Tcac02G0029360.1 Flavonoid UFGT medium pass
Tcac02G0029400.1 Flavonoid UFGT medium pass
Tcac02G0030800.1 Flavonoid UFGT high pass
Tcac02G0030820.1 Flavonoid UFGT high pass
Tcac02G0030830.1 Flavonoid UFGT medium pass
Tcac02G0033140.1 Flavonoid UFGT medium pass
Tcac03G0000530.1 Flavonoid UFGT high pass
Tcac03G0008280.1 Flavonoid UFGT medium pass
Tcac03G0008310.1 Flavonoid UFGT medium pass
Tcac03G0008320.1 Flavonoid UFGT high pass
Tcac03G0008340.1 Flavonoid UFGT medium pass
Tcac03G0009260.1 Flavonoid UFGT high pass
Tcac03G0016610.1 Flavonoid UFGT medium pass
Tcac03G0016620.1 Flavonoid UFGT medium pass
Tcac03G0026950.1 Flavonoid UFGT medium pass
Tcac03G0026960.1 Flavonoid UFGT high pass
Tcac03G0026970.1 Flavonoid UFGT high pass
Tcac03G0029000.1 Flavonoid UFGT medium pass
Tcac04G0007720.1 Flavonoid UFGT medium pass
Tcac04G0007730.1 Flavonoid UFGT medium pass
Tcac04G0008070.1 Flavonoid UFGT medium pass
Tcac04G0008080.1 Flavonoid UFGT high pass
Tcac04G0008090.1 Flavonoid UFGT medium pass
Tcac04G0008100.1 Flavonoid UFGT medium pass
Tcac04G0014060.1 Flavonoid UFGT medium pass
Tcac04G0014080.1 Flavonoid UFGT medium pass
Tcac04G0014080.2 Flavonoid UFGT low borderline
Tcac04G0014110.1 Flavonoid UFGT medium pass
Tcac04G0014110.2 Flavonoid UFGT high pass
Tcac04G0014120.1 Flavonoid UFGT medium pass
Tcac04G0014120.2 Flavonoid UFGT high pass
Tcac04G0014140.1 Flavonoid UFGT medium pass
Tcac04G0015860.1 Flavonoid UFGT high pass
Tcac04G0015890.1 Flavonoid UFGT medium pass
Tcac04G0016130.1 Flavonoid UFGT medium pass
Tcac04G0016130.2 Flavonoid UFGT high pass
Tcac04G0017330.1 Flavonoid UFGT medium pass
Tcac04G0017340.1 Flavonoid UFGT medium pass
Tcac04G0017350.1 Flavonoid UFGT medium pass