PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Tcac09G0016440.1 Phenylpropanoid 4CL medium pass
Tcac09G0032460.1 Phenylpropanoid 4CL medium pass
Tcac10G0008640.1 Phenylpropanoid 4CL medium pass
Tcac01G0002320.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0002550.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0003590.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0004540.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0004550.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006330.1 Phenylpropanoid C3'H/CYP98A medium pass
Tcac01G0006340.1 Phenylpropanoid C3'H/CYP98A medium pass
Tcac01G0006350.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006360.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006370.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006380.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006380.2 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006380.3 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0006380.4 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0009540.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0009540.2 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0010630.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0010840.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0010980.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0014980.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0015530.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0016660.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0018470.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0018470.2 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0019180.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0020720.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0020730.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0024320.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0030230.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0030230.2 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0031630.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac01G0033260.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0033260.2 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034170.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034200.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034750.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034760.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034760.2 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034770.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034770.2 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034770.3 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034780.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0034800.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0037430.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac01G0037440.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac02G0001770.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac02G0002710.1 Phenylpropanoid C3'H/CYP98A medium borderline