PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Tcac02G0029700.1 Flavonoid C4H medium borderline
Tcac05G0019850.1 Flavonoid C4H medium borderline
Tcac08G0003900.1 Flavonoid C4H medium borderline
Tcac09G0033950.1 Flavonoid C4H medium borderline
Tcac10G0010240.1 Flavonoid C4H medium borderline
Tcac10G0014090.1 Flavonoid C4H low borderline
Tcac10G0016790.1 Flavonoid C4H medium borderline
TcacsCAffold_540000440.1 Flavonoid C4H medium borderline
TcacsCAffold_540000450.1 Flavonoid C4H medium borderline
Tcac04G0001750.1 Flavonoid CHI medium pass
Tcac09G0006370.1 Flavonoid CHI low borderline
Tcac09G0006370.2 Flavonoid CHI low borderline
Tcac10G0005860.1 Flavonoid CHI medium pass
Tcac10G0005880.1 Flavonoid CHI medium pass
Tcac10G0005920.1 Flavonoid CHI medium pass
Tcac10G0016520.1 Flavonoid CHI medium pass
Tcac01G0036180.1 Flavonoid CHS medium pass
Tcac02G0006560.1 Flavonoid CHS medium pass
Tcac04G0004690.1 Flavonoid CHS medium pass
Tcac04G0004690.2 Flavonoid CHS medium pass
Tcac04G0004690.3 Flavonoid CHS medium pass
Tcac04G0019010.1 Flavonoid CHS medium pass
Tcac04G0022030.1 Flavonoid CHS low borderline
Tcac05G0012970.1 Flavonoid CHS medium pass
Tcac05G0012980.1 Flavonoid CHS medium pass
Tcac05G0012980.2 Flavonoid CHS medium pass
Tcac05G0012990.1 Flavonoid CHS medium pass
Tcac08G0013550.1 Flavonoid CHS medium pass
Tcac08G0013560.1 Flavonoid CHS low borderline
Tcac01G0003100.1 Flavonoid DFR medium borderline
Tcac01G0035140.1 Flavonoid DFR medium borderline
Tcac02G0014510.1 Flavonoid DFR medium borderline
Tcac03G0020370.1 Flavonoid DFR medium borderline
Tcac05G0019180.1 Flavonoid DFR medium borderline
Tcac05G0019300.1 Flavonoid DFR medium borderline
Tcac05G0025520.1 Flavonoid DFR low borderline
Tcac06G0003740.1 Flavonoid DFR medium borderline
Tcac07G0015890.1 Flavonoid DFR medium borderline
Tcac07G0015890.2 Flavonoid DFR low borderline
Tcac08G0009510.1 Flavonoid DFR medium borderline
Tcac08G0009520.1 Flavonoid DFR medium borderline
Tcac09G0015340.1 Flavonoid DFR medium borderline
Tcac09G0033080.1 Flavonoid DFR medium borderline
Tcac01G0003590.1 Flavonoid F3'5'H/CYP75A medium borderline
Tcac01G0006340.1 Flavonoid F3'5'H/CYP75A medium borderline
Tcac01G0015530.1 Flavonoid F3'5'H/CYP75A low borderline
Tcac01G0016660.1 Flavonoid F3'5'H/CYP75A medium borderline
Tcac01G0034790.1 Flavonoid F3'5'H/CYP75A low borderline
Tcac01G0034800.1 Flavonoid F3'5'H/CYP75A low borderline
Tcac02G0004440.1 Flavonoid F3'5'H/CYP75A medium borderline