PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac06G0007920.2 Flavonoid 4CL medium pass
Tcac06G0007920.3 Flavonoid 4CL medium pass
Tcac06G0011560.1 Flavonoid 4CL medium pass
Tcac08G0005380.1 Flavonoid 4CL medium pass
Tcac08G0005390.1 Flavonoid 4CL medium pass
Tcac08G0005660.1 Flavonoid 4CL medium pass
Tcac08G0011980.1 Flavonoid 4CL low borderline
Tcac08G0012890.1 Flavonoid 4CL medium pass
Tcac08G0012900.1 Flavonoid 4CL medium pass
Tcac09G0016440.1 Flavonoid 4CL medium pass
Tcac09G0032460.1 Flavonoid 4CL medium pass
Tcac10G0008640.1 Flavonoid 4CL medium pass
Tcac01G0032050.1 Flavonoid ANR medium borderline
Tcac01G0032050.2 Flavonoid ANR medium borderline
Tcac01G0032060.1 Flavonoid ANR low borderline
Tcac01G0032060.2 Flavonoid ANR low borderline
Tcac01G0035120.1 Flavonoid ANR medium borderline
Tcac01G0035130.1 Flavonoid ANR medium borderline
Tcac01G0035150.1 Flavonoid ANR medium borderline
Tcac01G0035170.1 Flavonoid ANR medium borderline
Tcac01G0038040.1 Flavonoid ANR medium borderline
Tcac01G0038050.1 Flavonoid ANR medium borderline
Tcac02G0021490.1 Flavonoid ANR medium borderline
Tcac03G0026990.1 Flavonoid ANR medium borderline
Tcac04G0001060.1 Flavonoid ANR low borderline
Tcac04G0009080.1 Flavonoid ANR medium borderline
Tcac04G0012620.1 Flavonoid ANR low borderline
Tcac05G0019160.1 Flavonoid ANR low borderline
Tcac05G0019200.1 Flavonoid ANR medium borderline
Tcac05G0019220.1 Flavonoid ANR high pass
Tcac05G0019240.1 Flavonoid ANR medium borderline
Tcac06G0005770.1 Flavonoid ANR medium borderline
Tcac06G0018920.1 Flavonoid ANR medium borderline
Tcac07G0005450.1 Flavonoid ANR medium borderline
Tcac07G0005450.2 Flavonoid ANR medium borderline
Tcac08G0001010.1 Flavonoid ANR low borderline
Tcac08G0002920.1 Flavonoid ANR medium borderline
Tcac08G0002930.1 Flavonoid ANR medium borderline
Tcac09G0006460.1 Flavonoid ANR low borderline
Tcac09G0006460.2 Flavonoid ANR low borderline
Tcac09G0021620.1 Flavonoid ANR medium borderline
Tcac09G0021620.2 Flavonoid ANR medium borderline
Tcac09G0021620.3 Flavonoid ANR medium borderline
Tcac10G0004860.1 Flavonoid ANR low borderline
Tcac01G0025090.1 Flavonoid ANS/LDOX low borderline
Tcac01G0025090.2 Flavonoid ANS/LDOX low borderline
Tcac03G0007090.1 Flavonoid ANS/LDOX low borderline
Tcac04G0022940.1 Flavonoid ANS/LDOX medium borderline
Tcac04G0023030.1 Flavonoid ANS/LDOX medium pass
Tcac04G0023090.1 Flavonoid ANS/LDOX medium borderline