PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2109
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Tcac06G0019920.1 Steroid CYP90D1 medium pass
Tcac07G0001730.1 Steroid CYP90D1 low borderline
Tcac07G0001740.1 Steroid CYP90D1 low borderline
Tcac07G0001780.1 Steroid CYP90D1 low borderline
Tcac07G0004190.1 Steroid CYP90D1 medium borderline
Tcac08G0001620.1 Steroid CYP90D1 low borderline
Tcac08G0001650.1 Steroid CYP90D1 low borderline
Tcac08G0001660.1 Steroid CYP90D1 low borderline
Tcac08G0001670.1 Steroid CYP90D1 low borderline
Tcac08G0001720.1 Steroid CYP90D1 low borderline
Tcac08G0001790.1 Steroid CYP90D1 low borderline
Tcac08G0002230.1 Steroid CYP90D1 low borderline
Tcac08G0002840.1 Steroid CYP90D1 low borderline
Tcac08G0003010.1 Steroid CYP90D1 medium borderline
Tcac08G0003030.1 Steroid CYP90D1 medium borderline
Tcac08G0003030.2 Steroid CYP90D1 medium borderline
Tcac08G0014210.1 Steroid CYP90D1 medium borderline
Tcac08G0017390.1 Steroid CYP90D1 low borderline
Tcac08G0017590.1 Steroid CYP90D1 low borderline
Tcac08G0018240.1 Steroid CYP90D1 low borderline
Tcac09G0000850.1 Steroid CYP90D1 low borderline
Tcac09G0011810.1 Steroid CYP90D1 low borderline
Tcac10G0001970.1 Steroid CYP90D1 medium borderline
Tcac10G0009500.1 Steroid CYP90D1 low borderline
Tcac10G0009530.1 Steroid CYP90D1 low borderline
Tcac10G0011840.1 Steroid CYP90D1 low borderline
Tcac10G0011840.2 Steroid CYP90D1 low borderline
Tcac10G0017160.1 Steroid CYP90D1 low borderline
Tcac02G0007130.1 Steroid DET2 low borderline
Tcac03G0004950.1 Steroid DET2 low borderline
Tcac03G0004950.2 Steroid DET2 low borderline
Tcac05G0002220.1 Steroid DET2 medium pass
Tcac05G0021780.1 Steroid DET2 low borderline
Tcac10G0004160.1 Steroid DET2 low borderline
Tcac10G0011290.1 Steroid DET2 low borderline
Tcac10G0011320.1 Steroid DET2 low borderline
Tcac02G0028470.1 Steroid DWF1 medium pass
Tcac05G0016920.1 Steroid DWF1 low borderline
Tcac01G0002290.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0004540.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006330.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006350.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006360.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006370.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.2 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.3 Steroid DWF4/CYP90B1 low borderline
Tcac01G0006380.4 Steroid DWF4/CYP90B1 low borderline
Tcac01G0010630.1 Steroid DWF4/CYP90B1 low borderline
Tcac01G0012710.4 Steroid DWF4/CYP90B1 low borderline