PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac06G0001200.1 Alkaloid BBE medium borderline
Tcac06G0001210.1 Alkaloid BBE medium borderline
Tcac06G0001230.1 Alkaloid BBE medium borderline
Tcac06G0001240.1 Alkaloid BBE medium borderline
Tcac06G0001270.1 Alkaloid BBE medium borderline
Tcac06G0001270.2 Alkaloid BBE medium borderline
Tcac06G0001300.1 Alkaloid BBE medium borderline
Tcac06G0001300.2 Alkaloid BBE medium borderline
Tcac06G0001300.3 Alkaloid BBE medium borderline
Tcac06G0001320.1 Alkaloid BBE medium borderline
Tcac06G0001330.1 Alkaloid BBE medium borderline
Tcac06G0001340.1 Alkaloid BBE medium borderline
Tcac06G0001360.1 Alkaloid BBE medium borderline
Tcac06G0001360.2 Alkaloid BBE medium borderline
Tcac06G0001360.3 Alkaloid BBE medium borderline
Tcac06G0001360.4 Alkaloid BBE medium borderline
Tcac06G0001390.1 Alkaloid BBE medium borderline
Tcac10G0011900.1 Alkaloid BBE medium borderline
Tcac01G0002530.1 Alkaloid CNMT low borderline
Tcac01G0015330.1 Alkaloid CNMT low borderline
Tcac01G0038130.1 Alkaloid CNMT low borderline
Tcac03G0012080.1 Alkaloid CNMT low borderline
Tcac04G0023870.1 Alkaloid CNMT medium pass
Tcac04G0023870.2 Alkaloid CNMT medium pass
Tcac05G0001590.1 Alkaloid CNMT low borderline
Tcac05G0013630.6 Alkaloid CNMT low borderline
Tcac05G0020790.1 Alkaloid CNMT low borderline
Tcac05G0020790.2 Alkaloid CNMT low borderline
Tcac05G0020790.3 Alkaloid CNMT low borderline
Tcac06G0001630.1 Alkaloid CNMT low borderline
Tcac06G0009980.2 Alkaloid CNMT low borderline
Tcac06G0009980.3 Alkaloid CNMT low borderline
Tcac09G0005780.1 Alkaloid CNMT medium borderline
Tcac09G0005780.2 Alkaloid CNMT medium borderline
Tcac09G0010380.1 Alkaloid CNMT low borderline
Tcac10G0008940.1 Alkaloid CNMT low borderline
Tcac01G0006000.1 Alkaloid CODM/T6ODM medium borderline
Tcac01G0013080.1 Alkaloid CODM/T6ODM medium borderline
Tcac01G0024060.1 Alkaloid CODM/T6ODM medium borderline
Tcac01G0034610.1 Alkaloid CODM/T6ODM medium borderline
Tcac02G0009110.1 Alkaloid CODM/T6ODM medium borderline
Tcac02G0009130.1 Alkaloid CODM/T6ODM medium borderline
Tcac02G0012890.1 Alkaloid CODM/T6ODM medium borderline
Tcac02G0026630.1 Alkaloid CODM/T6ODM medium borderline
Tcac02G0028350.1 Alkaloid CODM/T6ODM medium borderline
Tcac03G0012800.1 Alkaloid CODM/T6ODM medium borderline
Tcac03G0014630.1 Alkaloid CODM/T6ODM medium borderline
Tcac03G0014630.2 Alkaloid CODM/T6ODM medium borderline
Tcac03G0024420.1 Alkaloid CODM/T6ODM medium borderline
Tcac04G0022900.1 Alkaloid CODM/T6ODM medium borderline