PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac10G0012610.2 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0014100.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac10G0014120.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac10G0016350.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016360.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016370.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016390.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016400.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016420.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016440.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016450.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016460.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016480.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016510.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0016790.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac10G0017170.1 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0017170.2 Phenylpropanoid C3'H/CYP98A low borderline
Tcac10G0017170.3 Phenylpropanoid C3'H/CYP98A low borderline
TcacsCAffold_780000550.1 Phenylpropanoid C3'H/CYP98A medium borderline
Tcac02G0009340.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac02G0029660.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac02G0029690.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac02G0029700.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac03G0003010.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac03G0009890.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac04G0012230.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac05G0019940.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac06G0004920.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac07G0001720.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac07G0015770.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac08G0001670.2 Phenylpropanoid C4H/CYP73A low borderline
Tcac08G0001700.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac08G0003900.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac08G0009070.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac08G0009090.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac10G0010240.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac10G0014090.1 Phenylpropanoid C4H/CYP73A low borderline
Tcac10G0016380.1 Phenylpropanoid C4H/CYP73A low borderline
TcacsCAffold_540000440.1 Phenylpropanoid C4H/CYP73A medium borderline
TcacsCAffold_540000450.1 Phenylpropanoid C4H/CYP73A medium borderline
Tcac01G0006200.1 Phenylpropanoid CAD medium pass
Tcac01G0006210.1 Phenylpropanoid CAD medium pass
Tcac01G0008330.1 Phenylpropanoid CAD medium pass
Tcac01G0008340.1 Phenylpropanoid CAD medium pass
Tcac01G0008350.1 Phenylpropanoid CAD medium pass
Tcac01G0008350.2 Phenylpropanoid CAD medium pass
Tcac01G0008360.1 Phenylpropanoid CAD medium pass
Tcac01G0008370.1 Phenylpropanoid CAD medium pass
Tcac01G0008380.1 Phenylpropanoid CAD medium pass
Tcac01G0008390.1 Phenylpropanoid CAD medium pass