PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Tcac10G0016400.1 Rosmarinic Acid C4H low borderline
Tcac10G0016420.1 Rosmarinic Acid C4H low borderline
Tcac10G0016440.1 Rosmarinic Acid C4H low borderline
Tcac10G0016450.1 Rosmarinic Acid C4H low borderline
Tcac10G0016460.1 Rosmarinic Acid C4H low borderline
Tcac10G0016480.1 Rosmarinic Acid C4H low borderline
Tcac10G0016510.1 Rosmarinic Acid C4H low borderline
Tcac10G0016790.1 Rosmarinic Acid C4H medium pass
Tcac10G0017170.1 Rosmarinic Acid C4H low borderline
Tcac10G0017170.2 Rosmarinic Acid C4H low borderline
Tcac10G0017170.3 Rosmarinic Acid C4H low borderline
TcacsCAffold_540000440.1 Rosmarinic Acid C4H low borderline
TcacsCAffold_540000450.1 Rosmarinic Acid C4H low borderline
TcacsCAffold_780000550.1 Rosmarinic Acid C4H medium pass
Tcac01G0016910.1 Rosmarinic Acid CPR low borderline
Tcac05G0000450.1 Rosmarinic Acid CPR low borderline
Tcac05G0001210.1 Rosmarinic Acid CPR medium pass
Tcac08G0006840.1 Rosmarinic Acid CPR medium pass
Tcac09G0016940.1 Rosmarinic Acid CPR medium pass
Tcac09G0023820.1 Rosmarinic Acid CPR medium pass
Tcac01G0034620.1 Rosmarinic Acid HPPR medium pass
Tcac01G0034630.1 Rosmarinic Acid HPPR medium pass
Tcac01G0034640.1 Rosmarinic Acid HPPR medium pass
Tcac01G0034650.1 Rosmarinic Acid HPPR medium pass
Tcac01G0034650.2 Rosmarinic Acid HPPR medium pass
Tcac01G0034650.3 Rosmarinic Acid HPPR medium pass
Tcac03G0024370.1 Rosmarinic Acid HPPR medium pass
Tcac03G0024390.1 Rosmarinic Acid HPPR medium pass
Tcac03G0024400.1 Rosmarinic Acid HPPR medium pass
Tcac06G0007790.1 Rosmarinic Acid HPPR medium pass
Tcac06G0007800.1 Rosmarinic Acid HPPR medium pass
Tcac02G0023980.1 Rosmarinic Acid PAL low borderline
Tcac05G0006080.1 Rosmarinic Acid PAL high pass
Tcac05G0006080.2 Rosmarinic Acid PAL high pass
Tcac09G0008990.1 Rosmarinic Acid PAL low borderline
Tcac09G0031950.1 Rosmarinic Acid PAL high pass
Tcac09G0031950.2 Rosmarinic Acid PAL high pass
Tcac10G0007430.1 Rosmarinic Acid PAL high pass
Tcac01G0001420.1 Rosmarinic Acid RAS low borderline
Tcac01G0037410.1 Rosmarinic Acid RAS low borderline
Tcac02G0005870.1 Rosmarinic Acid RAS low borderline
Tcac02G0027940.1 Rosmarinic Acid RAS low borderline
Tcac03G0000670.1 Rosmarinic Acid RAS low borderline
Tcac03G0011560.1 Rosmarinic Acid RAS medium pass
Tcac03G0011560.2 Rosmarinic Acid RAS medium pass
Tcac04G0014220.1 Rosmarinic Acid RAS medium pass
Tcac04G0014220.2 Rosmarinic Acid RAS medium pass
Tcac04G0026000.1 Rosmarinic Acid RAS low borderline
Tcac05G0005720.1 Rosmarinic Acid RAS medium pass
Tcac05G0005730.1 Rosmarinic Acid RAS medium pass