PlantSME Plant secondary metabolism enzyme database

Theobroma cacao (theobroma_cacao)

Imported from atlas release summary for Theobroma cacao.

2555
Candidate Protein Records
2109
Pathway-Level Records
5264
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 617 19 BAHD (254) View species results
Alkaloid pathway 471 22 7DLGT (91) View species results
Phenylpropanoid pathway 442 11 POD (197) View species results
Flavonoid pathway 246 9 UFGT (165) View species results
Rosmarinic acid pathway 193 7 C4H (70) View species results
Steroid pathway 140 13 CAS (70) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1997 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Tcac08G0001710.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0001740.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0001770.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0009110.1 Steroid CPD/CYP90A1 medium borderline
Tcac08G0014770.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0014780.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0015200.1 Steroid CPD/CYP90A1 low borderline
Tcac08G0017950.1 Steroid CPD/CYP90A1 medium borderline
Tcac08G0017960.1 Steroid CPD/CYP90A1 medium borderline
Tcac08G0017990.1 Steroid CPD/CYP90A1 medium borderline
Tcac09G0000060.1 Steroid CPD/CYP90A1 medium borderline
Tcac10G0011250.1 Steroid CPD/CYP90A1 low borderline
Tcac03G0010820.1 Steroid CPI1 high pass
Tcac01G0002320.1 Steroid CYP51G1 medium borderline
Tcac01G0026460.1 Steroid CYP51G1 low borderline
Tcac02G0007390.1 Steroid CYP51G1 medium borderline
Tcac02G0018380.1 Steroid CYP51G1 medium borderline
Tcac02G0018380.2 Steroid CYP51G1 medium borderline
Tcac02G0024700.1 Steroid CYP51G1 medium borderline
Tcac03G0009870.1 Steroid CYP51G1 medium borderline
Tcac03G0009900.1 Steroid CYP51G1 medium borderline
Tcac03G0009910.1 Steroid CYP51G1 medium borderline
Tcac04G0006160.1 Steroid CYP51G1 medium borderline
Tcac04G0013650.1 Steroid CYP51G1 medium borderline
Tcac05G0020830.1 Steroid CYP51G1 low borderline
Tcac07G0001770.1 Steroid CYP51G1 medium borderline
Tcac07G0001770.2 Steroid CYP51G1 medium borderline
Tcac08G0005940.1 Steroid CYP51G1 low borderline
TcacsCAffold_780000550.1 Steroid CYP51G1 medium borderline
Tcac01G0003590.1 Steroid CYP90D1 medium borderline
Tcac01G0004550.1 Steroid CYP90D1 low borderline
Tcac01G0009540.1 Steroid CYP90D1 low borderline
Tcac01G0009540.2 Steroid CYP90D1 low borderline
Tcac01G0019180.1 Steroid CYP90D1 medium borderline
Tcac01G0020700.1 Steroid CYP90D1 low borderline
Tcac01G0034200.1 Steroid CYP90D1 medium borderline
Tcac01G0034800.1 Steroid CYP90D1 low borderline
Tcac01G0037430.1 Steroid CYP90D1 low borderline
Tcac01G0037440.1 Steroid CYP90D1 low borderline
Tcac02G0002710.1 Steroid CYP90D1 low borderline
Tcac02G0002720.1 Steroid CYP90D1 low borderline
Tcac02G0024130.1 Steroid CYP90D1 low borderline
Tcac02G0029650.1 Steroid CYP90D1 low borderline
Tcac02G0029660.1 Steroid CYP90D1 low borderline
Tcac02G0029680.1 Steroid CYP90D1 low borderline
Tcac02G0029680.2 Steroid CYP90D1 low borderline
Tcac02G0029690.1 Steroid CYP90D1 low borderline
Tcac02G0029710.1 Steroid CYP90D1 low borderline
Tcac02G0029720.1 Steroid CYP90D1 low borderline
Tcac02G0029720.2 Steroid CYP90D1 low borderline