PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr3.2832 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr3.2916 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr3.2932 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr3.3183 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr3.3192 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr3.3349 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr3.3356 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr3.858 Phenylpropanoid C3'H/CYP98A medium pass
fragaria_mandshurica_evm.model.chr4.111 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.1455 Phenylpropanoid C3'H/CYP98A medium pass
fragaria_mandshurica_evm.model.chr4.1463 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.1498 Phenylpropanoid C3'H/CYP98A medium pass
fragaria_mandshurica_evm.model.chr4.1978 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.1993 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2012 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2155 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.2294 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.2295 Phenylpropanoid C3'H/CYP98A medium pass
fragaria_mandshurica_evm.model.chr4.2319 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2320 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2324 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2325 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2343 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2421 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.2462 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.2567 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.3092 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr4.557 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.692 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr4.808 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.107 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.1076 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.1077 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.1263 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.1368 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.1412 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.160 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.161 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.162 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.165 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.167 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.1670 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.1705 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.1937 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.2426 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.2514 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.2516 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.256 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.2612 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.2613 Phenylpropanoid C3'H/CYP98A medium borderline