PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
Reset
Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr5.280 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.2990 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.2991 Phenylpropanoid C3'H/CYP98A medium pass
fragaria_mandshurica_evm.model.chr5.3104 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr5.53 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.677 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr5.776 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.1255 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.1565 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr6.1575 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.2255 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.2274 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.2619 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.2858 Phenylpropanoid C3'H/CYP98A medium pass
fragaria_mandshurica_evm.model.chr6.2909 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.3073 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.3381 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr6.3542 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.3610 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.3786 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.4101 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.4122 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.4604 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.4692 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.725 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.896 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.897 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.98 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr6.99 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.1006 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.1179 Phenylpropanoid C3'H/CYP98A high pass
fragaria_mandshurica_evm.model.chr7.1187 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr7.1237 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr7.132 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.1650 Phenylpropanoid C3'H/CYP98A medium borderline
fragaria_mandshurica_evm.model.chr7.1819 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.1990 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.2030 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.2132 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.2483 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.289 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.291 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.292 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.402 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.405 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.801_evm.model.chr7.802 Phenylpropanoid C3'H/CYP98A low borderline
fragaria_mandshurica_evm.model.chr7.842 Phenylpropanoid C3'H/CYP98A medium borderline