PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr0.545 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr0.546 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr0.862 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.1276 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.1703 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr1.2160 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr1.255 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.256 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.2703 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.2704 Flavonoid F3H medium pass
fragaria_mandshurica_evm.model.chr1.507 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.620 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.769 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr1.994 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr2.1084 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.1085 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr2.1480 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.1660 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.1666 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.1690 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.1697 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.1701 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.2166 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.2167 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.2169 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.2223 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.2287 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.2460 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr2.2461 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr2.2464 Flavonoid F3H medium pass
fragaria_mandshurica_evm.model.chr2.2465 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr2.553 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.554 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr2.556 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr3.115 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.1412 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.1609 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.2061 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr3.234 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.2791 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr3.2990 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.3295 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr3.3625 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.508 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.602 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr3.603 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr3.67 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr4.1534 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr4.1764 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr4.2100 Flavonoid F3H medium borderline