PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr4.272 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr4.2800 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr4.3047 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.119 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.1773 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr5.1821 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.1916 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.2413 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.2752 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.2953 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr5.3182 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr5.921 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.1113 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.1669 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.1670 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.1906 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.2038 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.2039 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.2675 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.2776 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr6.2778 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr6.2780 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr6.2781 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.3517 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr6.3750 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.1293 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.1838 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.2177 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.2301 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.2388 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.2585 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.2779 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.520 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.552 Flavonoid F3H low borderline
fragaria_mandshurica_evm.model.chr7.589 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.784 Flavonoid F3H medium pass
fragaria_mandshurica_evm.model.chr7.785 Flavonoid F3H medium borderline
fragaria_mandshurica_evm.model.chr7.986 Flavonoid F3H low borderline