PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
fragaria_mandshurica_evm.model.chr4.3118 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
fragaria_mandshurica_evm.model.chr4.364.1 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
fragaria_mandshurica_evm.model.chr4.922 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
fragaria_mandshurica_evm.model.chr5.1581 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
fragaria_mandshurica_evm.model.chr5.1722 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
fragaria_mandshurica_evm.model.chr5.1836 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
fragaria_mandshurica_evm.model.chr5.2048 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
fragaria_mandshurica_evm.model.chr5.2188 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
fragaria_mandshurica_evm.model.chr5.228 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
fragaria_mandshurica_evm.model.chr5.2284 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
fragaria_mandshurica_evm.model.chr5.2364 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
fragaria_mandshurica_evm.model.chr5.2884 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
fragaria_mandshurica_evm.model.chr5.2885 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
fragaria_mandshurica_evm.model.chr5.3122 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
fragaria_mandshurica_evm.model.chr5.3258 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
fragaria_mandshurica_evm.model.chr6.1453 Alkaloid NMT low borderline NMT__00061__sp_Q9SAH5_PLMT_ARATH
fragaria_mandshurica_evm.model.chr6.147 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
fragaria_mandshurica_evm.model.chr6.1566 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
fragaria_mandshurica_evm.model.chr6.1568 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
fragaria_mandshurica_evm.model.chr6.1983 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
fragaria_mandshurica_evm.model.chr6.2412 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
fragaria_mandshurica_evm.model.chr6.2535 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
fragaria_mandshurica_evm.model.chr6.3852 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
fragaria_mandshurica_evm.model.chr6.3872 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
fragaria_mandshurica_evm.model.chr6.4772 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
fragaria_mandshurica_evm.model.chr7.1168 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
fragaria_mandshurica_evm.model.chr7.1292 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
fragaria_mandshurica_evm.model.chr7.169 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
fragaria_mandshurica_evm.model.chr7.2172 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
fragaria_mandshurica_evm.model.chr7.2656 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
fragaria_mandshurica_evm.model.chr7.396 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
fragaria_mandshurica_evm.model.chr7.397 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
fragaria_mandshurica_evm.model.chr7.751 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
fragaria_mandshurica_evm.model.chr7.98 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH