Fragaria mandshurica (fragaria_mandshurica)
Imported from atlas release summary for Fragaria mandshurica.
1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1321
Candidate Genes
BAHD
6.6%
C4H
5.73%
C3'H/CYP98A
4.9%
UGT
4.5%
4CL
4.1%
7DLGT
3.93%
POD
3.77%
UFGT
3.67%
Other Families
62.81%
More Families (96)
IFS
103
3.43%
CYP76
102
3.4%
T3O
92
3.07%
F3H
88
2.93%
NMT
84
2.8%
F3'H/CYP75B
55
1.83%
CAD
55
1.83%
STR
54
1.8%
H6H
52
1.73%
DWF4/CYP90B1
52
1.73%
CODM/T6ODM
49
1.63%
BR6OX2/CYP85A2
48
1.6%
LAC
47
1.57%
SMT1/SMT2/SMT3
45
1.5%
CSE
44
1.47%
GS
39
1.3%
TRI/TRII
38
1.27%
CAS
38
1.27%
IFR
32
1.07%
SGD
28
0.93%
CYP90D1
28
0.93%
IO
27
0.9%
ANR
27
0.9%
TPS
27
0.9%
COMT
25
0.83%
T16H
24
0.8%
GES
24
0.8%
HCT
24
0.8%
RAS
24
0.8%
CYP71
24
0.8%
PMT
23
0.77%
BR6OX1/CYP85A1
23
0.77%
PYKS
21
0.7%
G8O/G8H
20
0.67%
CCR
20
0.67%
7DLH
19
0.63%
F3'5'H/CYP75A
18
0.6%
LAMT
17
0.57%
F5H/CYP84A
16
0.53%
PAL
15
0.5%
TAT
15
0.5%
COR
14
0.47%
NCS
13
0.43%
SLS
13
0.43%
CPD/CYP90A1
12
0.4%
FNS
11
0.37%
CCoAOMT
11
0.37%
MPO
10
0.33%
16OMT
10
0.33%
DFR
10
0.33%
SQE
10
0.33%
ISY
9
0.3%
8HGO
9
0.3%
ANS/LDOX
9
0.3%
FPPS
9
0.3%
ROT3/CYP90C1
8
0.27%
CNMT
7
0.23%
CHS
7
0.23%
DET2
6
0.2%
CYP51G1
6
0.2%
GGPPS
6
0.2%
AACT
6
0.2%
HMGR
6
0.2%
BBE
5
0.17%
HPPR
5
0.17%
SQS/FDFT1
5
0.17%
6OMT_4OMT_SOMT
4
0.13%
CYP719
4
0.13%
CPR
4
0.13%
TDC
3
0.1%
TYDC_DDC
3
0.1%
ADC
3
0.1%
SMO1/SMO2
3
0.1%
DXS
3
0.1%
MVK
3
0.1%
DXR
3
0.1%
PMK
3
0.1%
IDI
3
0.1%
MVD
3
0.1%
CYP80B1
2
0.07%
CHI
2
0.07%
DWF1
2
0.07%
ODC
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
HDR/IspH
1
0.03%
MCT/IspD
1
0.03%
HDS/IspG
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 387 | 18 | BAHD (153) | View species results |
| Alkaloid pathway | 304 | 22 | NMT (45) | View species results |
| Phenylpropanoid pathway | 284 | 11 | POD (104) | View species results |
| Flavonoid pathway | 165 | 11 | UFGT (101) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (34) | View species results |
| Steroid pathway | 85 | 13 | CAS (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1016 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 246 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_mandshurica_evm.model.chr3.615 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| fragaria_mandshurica_evm.model.chr3.728 | Terpenoid | BAHD | medium | pass | BAHD__00054__sp_Q8GYW8_SCT_ARATH |
| fragaria_mandshurica_evm.model.chr3.758 | Terpenoid | BAHD | medium | pass | BAHD__00054__sp_Q8GYW8_SCT_ARATH |
| fragaria_mandshurica_evm.model.chr3.86 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| fragaria_mandshurica_evm.model.chr3.87 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| fragaria_mandshurica_evm.model.chr3.88 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| fragaria_mandshurica_evm.model.chr4.1213 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| fragaria_mandshurica_evm.model.chr4.1464 | Terpenoid | BAHD | medium | pass | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| fragaria_mandshurica_evm.model.chr4.1604 | Terpenoid | BAHD | medium | pass | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| fragaria_mandshurica_evm.model.chr4.181 | Terpenoid | BAHD | low | borderline | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| fragaria_mandshurica_evm.model.chr4.1854 | Terpenoid | BAHD | medium | pass | BAHD__00069__sp_Q9C5W0_DGAT3_ARATH |
| fragaria_mandshurica_evm.model.chr4.1855 | Terpenoid | BAHD | medium | pass | BAHD__00018__sp_I1MRZ6_DAT32_SOYBN |
| fragaria_mandshurica_evm.model.chr4.1913 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| fragaria_mandshurica_evm.model.chr4.1956 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| fragaria_mandshurica_evm.model.chr4.1997 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| fragaria_mandshurica_evm.model.chr4.2016 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| fragaria_mandshurica_evm.model.chr4.2196 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| fragaria_mandshurica_evm.model.chr4.226 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| fragaria_mandshurica_evm.model.chr4.2535 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| fragaria_mandshurica_evm.model.chr4.2687 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| fragaria_mandshurica_evm.model.chr4.2957 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| fragaria_mandshurica_evm.model.chr4.2958 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| fragaria_mandshurica_evm.model.chr4.3071 | Terpenoid | BAHD | medium | pass | BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH |
| fragaria_mandshurica_evm.model.chr4.3094 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| fragaria_mandshurica_evm.model.chr4.591 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| fragaria_mandshurica_evm.model.chr4.604 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| fragaria_mandshurica_evm.model.chr4.721 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| fragaria_mandshurica_evm.model.chr4.722 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| fragaria_mandshurica_evm.model.chr4.940 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| fragaria_mandshurica_evm.model.chr4.941 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| fragaria_mandshurica_evm.model.chr4.942 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| fragaria_mandshurica_evm.model.chr5.152 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| fragaria_mandshurica_evm.model.chr5.2006 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| fragaria_mandshurica_evm.model.chr5.2009 | Terpenoid | BAHD | low | borderline | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| fragaria_mandshurica_evm.model.chr5.2099 | Terpenoid | BAHD | medium | pass | BAHD__00034__sp_P10349_GPAT2_CUCMO |
| fragaria_mandshurica_evm.model.chr5.2204 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| fragaria_mandshurica_evm.model.chr5.2218 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| fragaria_mandshurica_evm.model.chr5.2233 | Terpenoid | BAHD | low | borderline | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| fragaria_mandshurica_evm.model.chr5.2247 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |
| fragaria_mandshurica_evm.model.chr5.2625 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| fragaria_mandshurica_evm.model.chr5.2626 | Terpenoid | BAHD | low | borderline | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| fragaria_mandshurica_evm.model.chr5.2787 | Terpenoid | BAHD | low | borderline | BAHD__00024__sp_O23393_BIA1_ARATH |
| fragaria_mandshurica_evm.model.chr5.2937 | Terpenoid | BAHD | medium | pass | BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH |
| fragaria_mandshurica_evm.model.chr5.3156 | Terpenoid | BAHD | medium | pass | BAHD__00050__sp_Q6DR03_ZDHC3_ARATH |
| fragaria_mandshurica_evm.model.chr5.3338 | Terpenoid | BAHD | medium | pass | BAHD__00052__sp_Q8GWG0_GPAT9_ARATH |
| fragaria_mandshurica_evm.model.chr5.74 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| fragaria_mandshurica_evm.model.chr5.806 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| fragaria_mandshurica_evm.model.chr5.828 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| fragaria_mandshurica_evm.model.chr6.1153 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| fragaria_mandshurica_evm.model.chr6.1161 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |