PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1321
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr7.289 Alkaloid 7DLH medium borderline
fragaria_mandshurica_evm.model.chr2.1531 Alkaloid 8HGO medium borderline
fragaria_mandshurica_evm.model.chr2.3152 Alkaloid 8HGO medium pass
fragaria_mandshurica_evm.model.chr2.3156 Alkaloid 8HGO low borderline
fragaria_mandshurica_evm.model.chr2.824 Alkaloid 8HGO medium borderline
fragaria_mandshurica_evm.model.chr2.825 Alkaloid 8HGO medium borderline
fragaria_mandshurica_evm.model.chr3.2367 Alkaloid 8HGO low borderline
fragaria_mandshurica_evm.model.chr5.1702 Alkaloid 8HGO medium borderline
fragaria_mandshurica_evm.model.chr5.939 Alkaloid 8HGO medium borderline
fragaria_mandshurica_evm.model.chr7.2853 Alkaloid 8HGO medium borderline
fragaria_mandshurica_evm.model.chr2.704 Alkaloid ADC medium pass
fragaria_mandshurica_evm.model.chr7.210 Alkaloid ADC medium pass
fragaria_mandshurica_evm.model.chr7.211 Alkaloid ADC medium pass
fragaria_mandshurica_evm.model.chr0.740 Alkaloid BBE medium borderline
fragaria_mandshurica_evm.model.chr2.2989 Alkaloid BBE low borderline
fragaria_mandshurica_evm.model.chr3.977 Alkaloid BBE medium borderline
fragaria_mandshurica_evm.model.chr3.998 Alkaloid BBE low borderline
fragaria_mandshurica_evm.model.chr6.1779 Alkaloid BBE low borderline
fragaria_mandshurica_evm.model.chr1.2301 Alkaloid CNMT low borderline
fragaria_mandshurica_evm.model.chr2.2575 Alkaloid CNMT medium borderline
fragaria_mandshurica_evm.model.chr2.463 Alkaloid CNMT low borderline
fragaria_mandshurica_evm.model.chr4.2572 Alkaloid CNMT low borderline
fragaria_mandshurica_evm.model.chr5.845 Alkaloid CNMT low borderline
fragaria_mandshurica_evm.model.chr6.2890 Alkaloid CNMT low borderline
fragaria_mandshurica_evm.model.chr6.4053 Alkaloid CNMT low borderline
fragaria_mandshurica_evm.model.chr1.255 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr1.256 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr1.2703 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr1.620 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr1.769 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.1084 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.111 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.1480 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.2166 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.2223 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.2287 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.2464 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.2465 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr2.556 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.1412 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.1487 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.1609 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.1610 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.234 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.2990 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.3295 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.3625 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.508 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.602 Alkaloid CODM/T6ODM medium borderline
fragaria_mandshurica_evm.model.chr3.603 Alkaloid CODM/T6ODM low borderline