Fragaria mandshurica (fragaria_mandshurica)
Imported from atlas release summary for Fragaria mandshurica.
1550
Candidate Protein Records
1321
Pathway-Level Records
3001
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3001
Family-Level Calls
BAHD
6.6%
C4H
5.73%
C3'H/CYP98A
4.9%
UGT
4.5%
4CL
4.1%
7DLGT
3.93%
POD
3.77%
UFGT
3.67%
Other Families
62.81%
More Families (96)
IFS
103
3.43%
CYP76
102
3.4%
T3O
92
3.07%
F3H
88
2.93%
NMT
84
2.8%
F3'H/CYP75B
55
1.83%
CAD
55
1.83%
STR
54
1.8%
H6H
52
1.73%
DWF4/CYP90B1
52
1.73%
CODM/T6ODM
49
1.63%
BR6OX2/CYP85A2
48
1.6%
LAC
47
1.57%
SMT1/SMT2/SMT3
45
1.5%
CSE
44
1.47%
GS
39
1.3%
TRI/TRII
38
1.27%
CAS
38
1.27%
IFR
32
1.07%
SGD
28
0.93%
CYP90D1
28
0.93%
IO
27
0.9%
ANR
27
0.9%
TPS
27
0.9%
COMT
25
0.83%
T16H
24
0.8%
GES
24
0.8%
HCT
24
0.8%
RAS
24
0.8%
CYP71
24
0.8%
PMT
23
0.77%
BR6OX1/CYP85A1
23
0.77%
PYKS
21
0.7%
G8O/G8H
20
0.67%
CCR
20
0.67%
7DLH
19
0.63%
F3'5'H/CYP75A
18
0.6%
LAMT
17
0.57%
F5H/CYP84A
16
0.53%
PAL
15
0.5%
TAT
15
0.5%
COR
14
0.47%
NCS
13
0.43%
SLS
13
0.43%
CPD/CYP90A1
12
0.4%
FNS
11
0.37%
CCoAOMT
11
0.37%
MPO
10
0.33%
16OMT
10
0.33%
DFR
10
0.33%
SQE
10
0.33%
ISY
9
0.3%
8HGO
9
0.3%
ANS/LDOX
9
0.3%
FPPS
9
0.3%
ROT3/CYP90C1
8
0.27%
CNMT
7
0.23%
CHS
7
0.23%
DET2
6
0.2%
CYP51G1
6
0.2%
GGPPS
6
0.2%
AACT
6
0.2%
HMGR
6
0.2%
BBE
5
0.17%
HPPR
5
0.17%
SQS/FDFT1
5
0.17%
6OMT_4OMT_SOMT
4
0.13%
CYP719
4
0.13%
CPR
4
0.13%
TDC
3
0.1%
TYDC_DDC
3
0.1%
ADC
3
0.1%
SMO1/SMO2
3
0.1%
DXS
3
0.1%
MVK
3
0.1%
DXR
3
0.1%
PMK
3
0.1%
IDI
3
0.1%
MVD
3
0.1%
CYP80B1
2
0.07%
CHI
2
0.07%
DWF1
2
0.07%
ODC
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
HDR/IspH
1
0.03%
MCT/IspD
1
0.03%
HDS/IspG
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 387 | 18 | BAHD (153) | View species results |
| Alkaloid pathway | 304 | 22 | NMT (45) | View species results |
| Phenylpropanoid pathway | 284 | 11 | POD (104) | View species results |
| Flavonoid pathway | 165 | 11 | UFGT (101) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (34) | View species results |
| Steroid pathway | 85 | 13 | CAS (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1016 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 246 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| fragaria_mandshurica_evm.model.chr2.1257 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr2.266 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr2.267 | Alkaloid | GS | medium | pass |
| fragaria_mandshurica_evm.model.chr2.268 | Alkaloid | GS | medium | pass |
| fragaria_mandshurica_evm.model.chr2.3203 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr3.1040 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr3.1648 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr3.1737 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr3.2376 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr3.2753 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr3.3696 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr3.380 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr3.382 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr4.2859 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr5.903 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr6.3611 | Alkaloid | GS | medium | pass |
| fragaria_mandshurica_evm.model.chr6.3612 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr6.3613_evm.model.chr6.3614 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr6.4440 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr6.4441 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr6.4507 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr6.4508 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr7.2026 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr7.2126 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr7.2196_evm.model.chr7.2197 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr7.2400 | Alkaloid | GS | low | borderline |
| fragaria_mandshurica_evm.model.chr7.2401 | Alkaloid | GS | medium | pass |
| fragaria_mandshurica_evm.model.chr7.475 | Alkaloid | GS | high | pass |
| fragaria_mandshurica_evm.model.chr0.545 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr0.546 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr0.862 | Alkaloid | H6H | medium | borderline |
| fragaria_mandshurica_evm.model.chr1.1276 | Alkaloid | H6H | high | pass |
| fragaria_mandshurica_evm.model.chr1.1703 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr1.2159 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr1.2160 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr1.2704 | Alkaloid | H6H | medium | pass |
| fragaria_mandshurica_evm.model.chr1.45 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr1.508 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr1.768 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr1.994 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr2.1085 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr2.1660 | Alkaloid | H6H | medium | borderline |
| fragaria_mandshurica_evm.model.chr2.1666 | Alkaloid | H6H | medium | borderline |
| fragaria_mandshurica_evm.model.chr2.1690 | Alkaloid | H6H | medium | borderline |
| fragaria_mandshurica_evm.model.chr2.1697 | Alkaloid | H6H | medium | borderline |
| fragaria_mandshurica_evm.model.chr2.1701 | Alkaloid | H6H | medium | borderline |
| fragaria_mandshurica_evm.model.chr2.1794 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr2.2167 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr2.2459 | Alkaloid | H6H | low | borderline |
| fragaria_mandshurica_evm.model.chr2.2460 | Alkaloid | H6H | low | borderline |