PlantSME Plant secondary metabolism enzyme database

Fragaria mandshurica (fragaria_mandshurica)

Imported from atlas release summary for Fragaria mandshurica.

1550
Candidate Protein Records
1321
Pathway-Level Records
3001
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 387 18 BAHD (153) View species results
Alkaloid pathway 304 22 NMT (45) View species results
Phenylpropanoid pathway 284 11 POD (104) View species results
Flavonoid pathway 165 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (34) View species results
Steroid pathway 85 13 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
fragaria_mandshurica_evm.model.chr3.3003 Terpenoid GGPPS medium borderline
fragaria_mandshurica_evm.model.chr3.467 Terpenoid GGPPS medium borderline
fragaria_mandshurica_evm.model.chr2.452 Terpenoid HDR/IspH high pass
fragaria_mandshurica_evm.model.chr3.1889 Terpenoid HDS/IspG high pass
fragaria_mandshurica_evm.model.chr2.1249 Terpenoid HMGR medium pass
fragaria_mandshurica_evm.model.chr2.1250 Terpenoid HMGR medium pass
fragaria_mandshurica_evm.model.chr2.1252 Terpenoid HMGR medium pass
fragaria_mandshurica_evm.model.chr2.1253 Terpenoid HMGR medium pass
fragaria_mandshurica_evm.model.chr2.1381 Terpenoid HMGR medium pass
fragaria_mandshurica_evm.model.chr5.3194 Terpenoid HMGR medium pass
fragaria_mandshurica_evm.model.chr5.138 Terpenoid HMGS high pass
fragaria_mandshurica_evm.model.chr6.3762 Terpenoid IDI medium pass
fragaria_mandshurica_evm.model.chr6.53 Terpenoid IDI medium pass
fragaria_mandshurica_evm.model.chr7.1726 Terpenoid IDI low borderline
fragaria_mandshurica_evm.model.chr3.1187 Terpenoid MCT/IspD low borderline
fragaria_mandshurica_evm.model.chr5.308 Terpenoid MDS/IspF high pass
fragaria_mandshurica_evm.model.chr7.2309 Terpenoid MVD medium pass
fragaria_mandshurica_evm.model.chr7.2312.2 Terpenoid MVD low borderline
fragaria_mandshurica_evm.model.chr7.670 Terpenoid MVD medium pass
fragaria_mandshurica_evm.model.chr2.1223 Terpenoid MVK low borderline
fragaria_mandshurica_evm.model.chr6.431 Terpenoid MVK medium pass
fragaria_mandshurica_evm.model.chr7.1219 Terpenoid MVK low borderline
fragaria_mandshurica_evm.model.chr4.626 Terpenoid PMK low borderline
fragaria_mandshurica_evm.model.chr5.2127 Terpenoid PMK medium pass
fragaria_mandshurica_evm.model.chr6.4584 Terpenoid PMK low borderline
fragaria_mandshurica_evm.model.chr0.340 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr1.619 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr2.1761 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr2.1829 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.1296 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.1297 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.1298 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.1299 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.1300 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.139 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.2447 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.259 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.2933 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.2935 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.2945 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.2954 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr3.3015 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr5.2417 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr6.1121 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr6.2020 Terpenoid TPS low borderline
fragaria_mandshurica_evm.model.chr6.2040 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr6.3867 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr6.3868 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr6.3869 Terpenoid TPS medium pass
fragaria_mandshurica_evm.model.chr6.3870 Terpenoid TPS medium pass